Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Callipepla_20squamata_20[genbank_20GCA_5F002218305.1_202017-07-13] 34,302 sequences; 1,045,281,893 total letters Query= NC_003663.2 Length=224499 Score E Sequences producing significant alignments: (Bits) Value seq518 129 8e-25 seq184 107 3e-18 seq1256 105 1e-17 >seq518 Length=643042 Score = 129 bits (142), Expect = 8e-25 Identities = 110/136 (81%), Gaps = 0/136 (0%) Strand=Plus/Plus Query 49982 CCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 50041 |||| ||||| ||||| ||||| ||||| || || | ||| ||||| ||||| | ||| | Sbjct 337086 CCTCATCTCTGCTAATAAGTTCATTGGAGAAAGTCAATCCAGGCATCAGGCCCCTCTTCT 337145 Query 50042 TAAGCCAAAATATGGACGCAAATGACCCAGAAAAGAAGATTCCTTCTACTGCGGCAAAGG 50101 | ||||||||||| | |||||||| || ||||||||||| ||||| ||||| ||||||| Sbjct 337146 TCAGCCAAAATATAGCAGCAAATGAACCCGAAAAGAAGATGCCTTCAACTGCAGCAAAGG 337205 Query 50102 CAACAAGTCTCTCTCC 50117 | || | |||||| || Sbjct 337206 CGACCACTCTCTCACC 337221 >seq184 Length=1437213 Score = 107 bits (118), Expect = 3e-18 Identities = 98/124 (79%), Gaps = 0/124 (0%) Strand=Plus/Minus Query 49982 CCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 50041 |||| |||||||| || ||||| || || || |||||||| ||||||| || | || | Sbjct 74009 CCTCATCTCTACTGATGAGTTCATTAGAGAAAGTGAGTCCAGGCATTAAACCTCTTTTCT 73950 Query 50042 TAAGCCAAAATATGGACGCAAATGACCCAGAAAAGAAGATTCCTTCTACTGCGGCAAAGG 50101 | ||||| || || || ||||| || |||||||||||||| ||||| ||||| ||||| | Sbjct 73949 TCAGCCAGAAAATTGATGCAAAAGAGCCAGAAAAGAAGATGCCTTCCACTGCTGCAAATG 73890 Query 50102 CAAC 50105 | || Sbjct 73889 CTAC 73886 Score = 102 bits (112), Expect = 1e-16 Identities = 86/106 (81%), Gaps = 0/106 (0%) Strand=Plus/Minus Query 50220 ATCTTTAACATAAGTATCGATCAAAAGACTATACATTTCCGAATGAATGTTTTCAATGGC 50279 |||||||| || || || || | |||||| |||||||| || || |||||||| ||||| Sbjct 72417 ATCTTTAATGTATGTGTCAATGAGAAGACTGTACATTTCTGAGTGTATGTTTTCCATGGC 72358 Query 50280 CATCTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGCACTTCT 50325 ||||| || || |||||||| | ||||| ||||||||||||||| Sbjct 72357 AATCTGGAAGCCATAGAAACAACGCGCCTCTGTAATCTGCACTTCT 72312 >seq1256 Length=67100 Score = 105 bits (116), Expect = 1e-17 Identities = 112/148 (76%), Gaps = 0/148 (0%) Strand=Plus/Plus Query 78785 TCCATCCGTAGAAATGCATACTCGTTAGTTTGGAATAACTCGGATCTGCTATATGGATAT 78844 |||| || ||||| ||||| || || |||||| ||| | || ||||| || ||||| | Sbjct 24994 TCCACCCATAGAAGTGCATGCTGGTGAGTTTGCCATAGTTGGGCTCTGCGATGTGGATGT 25053 Query 78845 TCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATGATCGTCT 78904 | | |||||| || ||||||||||| ||||| |||||||| ||||| || | ||| || | Sbjct 25054 TGAGAGATTGGCTCTGATCGATGAACGCTCCTCTGTCTGCTGCCATCTTGAGGATAGTTT 25113 Query 78905 TTTGTGGAATTTCCCAAATAGTTTTATA 78932 | || | || ||||| | || ||||| Sbjct 25114 TCTGGGAGATCTCCCACACCGTCTTATA 25141 Score = 93.3 bits (102), Expect = 6e-14 Identities = 103/135 (76%), Gaps = 2/135 (1%) Strand=Plus/Plus Query 79939 ACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGC 79998 |||| ||||||||||||||||||||||| ||||| | || || ||||||| | ||| Sbjct 31004 ACTCTCTTCATAAAGAGATCAGGAATCCAGAGAGCAAAGAAAAGGTCTCTGGCACGCTGC 31063 Query 79999 TCCTCGTTTCCTGTATTCTT-TTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGG 80057 ||||| || || || ||||| |||||| || || ||| | | || || |||||||| Sbjct 31064 TCCTCCTTCCCAGTGTTCTTCTTTAAG-TCCAGAAACTCGAAGATGTCCAGGTGCCACGG 31122 Query 80058 TTCCAAGTATATGGC 80072 |||| ||| ||||| Sbjct 31123 CTCCAGGTAGATGGC 31137 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 717960824295280