Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Callipepla_20squamata_20[genbank_20GCA_5F002218305.1_202017-07-13] 34,302 sequences; 1,045,281,893 total letters Query= NC_004105.1 Length=209771 Score E Sequences producing significant alignments: (Bits) Value seq518 129 8e-25 seq184 105 9e-18 seq1256 95.1 2e-14 >seq518 Length=643042 Score = 129 bits (142), Expect = 8e-25 Identities = 110/136 (81%), Gaps = 0/136 (0%) Strand=Plus/Plus Query 42087 CCTCATCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 42146 |||||||||| ||||| | ||| ||||| || || | ||| ||||| ||||| | ||| | Sbjct 337086 CCTCATCTCTGCTAATAAGTTCATTGGAGAAAGTCAATCCAGGCATCAGGCCCCTCTTCT 337145 Query 42147 TAAGCCAAAATATAGACGCAAATGATCCAGAAAAGAAGATTCCTTCTACTGCCGCAAAGG 42206 | ||||||||||||| |||||||| || ||||||||||| ||||| ||||| ||||||| Sbjct 337146 TCAGCCAAAATATAGCAGCAAATGAACCCGAAAAGAAGATGCCTTCAACTGCAGCAAAGG 337205 Query 42207 CAATAAGTCTCTCTCC 42222 | | | |||||| || Sbjct 337206 CGACCACTCTCTCACC 337221 >seq184 Length=1437213 Score = 105 bits (116), Expect = 9e-18 Identities = 96/121 (79%), Gaps = 0/121 (0%) Strand=Plus/Minus Query 42087 CCTCATCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 42146 ||||||||||||| || | ||| || || || |||||||| ||||||| || | || | Sbjct 74009 CCTCATCTCTACTGATGAGTTCATTAGAGAAAGTGAGTCCAGGCATTAAACCTCTTTTCT 73950 Query 42147 TAAGCCAAAATATAGACGCAAATGATCCAGAAAAGAAGATTCCTTCTACTGCCGCAAAGG 42206 | ||||| || || || ||||| || |||||||||||||| ||||| ||||| ||||| | Sbjct 73949 TCAGCCAGAAAATTGATGCAAAAGAGCCAGAAAAGAAGATGCCTTCCACTGCTGCAAATG 73890 Query 42207 C 42207 | Sbjct 73889 C 73889 Score = 102 bits (112), Expect = 1e-16 Identities = 86/106 (81%), Gaps = 0/106 (0%) Strand=Plus/Minus Query 42325 ATCTTTAACATATGTATCGATCAAAAGACTATACATTTCTGAATGAATGTTTTCAATGGC 42384 |||||||| ||||| || || | |||||| ||||||||||| || |||||||| ||||| Sbjct 72417 ATCTTTAATGTATGTGTCAATGAGAAGACTGTACATTTCTGAGTGTATGTTTTCCATGGC 72358 Query 42385 CATCTGAAATCCGTAGAAACATCTGGCCTCGGTAACCTGTACTTCT 42430 ||||| || || |||||||| | ||||| |||| ||| |||||| Sbjct 72357 AATCTGGAAGCCATAGAAACAACGCGCCTCTGTAATCTGCACTTCT 72312 Score = 86.0 bits (94), Expect = 8e-12 Identities = 76/95 (80%), Gaps = 0/95 (0%) Strand=Plus/Minus Query 41759 GACATAACTCCCATTTTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTCTTTCCT 41818 ||||| |||||||| | || |||||||| || || || || || ||||| ||||| ||| Sbjct 75263 GACATGACTCCCATCCTCTGATATTCACCTACTCGCTTCTCAAAGAAATTGGTCTTGCCT 75204 Query 41819 TCCAATGATATATTTTCCATGAAATCAAACGGATT 41853 |||| || || || |||||||||||||| ||||| Sbjct 75203 TCCAGAGAGATGTTCTCCATGAAATCAAAAGGATT 75169 >seq1256 Length=67100 Score = 95.1 bits (104), Expect = 2e-14 Identities = 112/149 (75%), Gaps = 2/149 (1%) Strand=Plus/Plus Query 72022 ACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGC 72081 |||| ||||||||||||||||||||||| ||||| | || || ||||||| | ||| Sbjct 31004 ACTCTCTTCATAAAGAGATCAGGAATCCAGAGAGCAAAGAAAAGGTCTCTGGCACGCTGC 31063 Query 72082 TCCTCGTTTCCTGTATTCTT-TTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGG 72140 ||||| || || || ||||| |||||| || || ||| | | || || |||||||| Sbjct 31064 TCCTCCTTCCCAGTGTTCTTCTTTAAG-TCCAGAAACTCGAAGATGTCCAGGTGCCACGG 31122 Query 72141 TTCCAAGTATATGGCCATAACTCCCGGCC 72169 |||| ||| ||||| | | | || |||| Sbjct 31123 CTCCAGGTAGATGGCAAAAGCCCCAGGCC 31151 Score = 91.5 bits (100), Expect = 2e-13 Identities = 109/148 (74%), Gaps = 0/148 (0%) Strand=Plus/Plus Query 70868 TCCATCCGTAAAAATGCATACTCGTTAGTTTGGAATAGCTAGGATCGGCTATGTGAATAT 70927 |||| || || || ||||| || || |||||| |||| | || || || ||||| || | Sbjct 24994 TCCACCCATAGAAGTGCATGCTGGTGAGTTTGCCATAGTTGGGCTCTGCGATGTGGATGT 25053 Query 70928 TCATCGACTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATGATCGTCT 70987 | | || || || ||||||||||| ||||| |||||||| ||||| || | ||| || | Sbjct 25054 TGAGAGATTGGCTCTGATCGATGAACGCTCCTCTGTCTGCTGCCATCTTGAGGATAGTTT 25113 Query 70988 TTTGTGGAATTTCCCAAATAGTTTTATA 71015 | || | || ||||| | || ||||| Sbjct 25114 TCTGGGAGATCTCCCACACCGTCTTATA 25141 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 670851432289520