Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Callipepla_20squamata_20[genbank_20GCA_5F002218305.1_202017-07-13] 34,302 sequences; 1,045,281,893 total letters Query= NC_004117.1 Length=158482 Score E Sequences producing significant alignments: (Bits) Value seq384 132 5e-26 seq448 82.4 8e-11 >seq384 Length=852418 Score = 132 bits (146), Expect = 5e-26 Identities = 166/228 (73%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 142957 GCCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCT 143016 |||||| | | ||||| || | || | || |||||||| || |||||||| ||| Sbjct 85993 GCCTCCCCTCAGACGCAGCACCAGGTGCAGGGTGGATTCTTTCTGGATGTTGTAGTCGGA 86052 Query 143017 CATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGG 143076 || |||| | |||||| || || ||||||||| ||||||| | |||||||||||||| Sbjct 86053 CAGGGTGCGCCCGTCTTCCAGCTGCTTACCAGCAAAGATCAGCCTCTGCTGATCGGGAGG 86112 Query 143077 TATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTAC 143136 |||||||||||||| || || || | | || | ||||| |||| || || Sbjct 86113 AATGCCTTCTTTGTCTTGGATCTTGGCCTTCACATTCTCTATGGTGTCACTGGGCTCGAC 86172 Query 143137 TTCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 143184 |||| ||| | |||||||| ||||| ||||| ||||| || ||||| Sbjct 86173 CTCAAGAGTGATTGTCTTGCCAGTCAAGGTTTTCACGAAGATCTGCAT 86220 Score = 111 bits (122), Expect = 2e-19 Identities = 163/231 (71%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 142954 ATGGCCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATC 143013 || |||||||| | ||||| || | || | || || || || || |||||||| || Sbjct 85762 ATTGCCTCCTCTCAGACGCAGCACCAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTC 85821 Query 143014 GCTCATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGG 143073 || |||| | ||||| || || |||||||| ||||||| | ||||||||||| Sbjct 85822 AGACAGGGTGCGCCCATCTTCCAGCTGCTTACCAGCGAAGATCAGCCTCTGCTGATCGGG 85881 Query 143074 AGGTATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTC 143133 ||| |||||||||||||| || || || | | ||| | ||||| |||| || Sbjct 85882 AGGAATGCCTTCTTTGTCTTGGATCTTGGCCTTCACGTTTTCAATGGTGTCACTGGGCTC 85941 Query 143134 TACTTCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 143184 ||||||| || | |||||||| |||| || || ||||| || ||||| Sbjct 85942 AACTTCAAGGGTGATGGTCTTGCCAGTCAGGGTCTTCACGAAGATCTGCAT 85992 Score = 105 bits (116), Expect = 7e-18 Identities = 160/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 142957 GCCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCT 143016 |||||| | | ||||| || | || | || |||||||| || |||||||| || Sbjct 86449 GCCTCCCCTCAGACGCAGCACCAGGTGCAGGGTGGATTCTTTCTGGATGTTGTAGTCAGA 86508 Query 143017 CATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGG 143076 || |||| | |||||| || || |||||||| ||||||| | |||||||||||||| Sbjct 86509 CAGGGTGCGCCCGTCTTCCAGCTGCTTACCAGCGAAGATCAGCCTCTGCTGATCGGGAGG 86568 Query 143077 TATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTAC 143136 |||||||||||||| || || || | | || | ||||| | || || || Sbjct 86569 AATGCCTTCTTTGTCTTGGATCTTGGCCTTCACATTCTCTATGGTGTCGCTAGGCTCGAC 86628 Query 143137 TTCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 143184 |||| ||| | |||||||| |||| || || || || || ||||| Sbjct 86629 CTCAAGAGTGATGGTCTTGCCAGTCAGGGTCTTCACAAAGATCTGCAT 86676 Score = 96.9 bits (106), Expect = 4e-15 Identities = 158/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 142957 GCCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCT 143016 ||| |||| | ||||| || | || | || || || || || |||||||| ||| Sbjct 86221 GCCACCTCTCAGACGCAGCACCAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCGGA 86280 Query 143017 CATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGG 143076 || |||| | ||||| || || || ||||| ||||||| | |||||||||||||| Sbjct 86281 CAGGGTGCGCCCATCTTCCAGCTGCTTGCCAGCGAAGATCAGCCTCTGCTGATCGGGAGG 86340 Query 143077 TATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTAC 143136 |||||||||||||| || || |||| | ||| | ||||| |||| || || Sbjct 86341 AATGCCTTCTTTGTCTTGGATCTTGGCCTTTACGTTTTCAATGGTGTCACTGGGCTCGAC 86400 Query 143137 TTCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 143184 || | || | |||||||| |||| || || || || || ||||| Sbjct 86401 CTCGAGCGTGATGGTCTTGCCAGTCAGGGTCTTCACAAAGATCTGCAT 86448 >seq448 Length=747048 Score = 82.4 bits (90), Expect = 8e-11 Identities = 155/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 142957 GCCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCT 143016 |||||| | | |||| || | ||| | || || || || || |||||||| ||| Sbjct 684111 GCCTCCCCTCAGGCGCAGGACGAGATGCAGGGTGGACTCCTTCTGGATGTTGTAGTCGGA 684052 Query 143017 CATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGG 143076 || |||| | ||||| || || || |||||| | ||||| | ||||||||||| || Sbjct 684051 CAGGGTGCGCCCATCTTCCAGCTGCTTGCCAGCAAAAATCAGCCTCTGCTGATCGGGGGG 683992 Query 143077 TATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTAC 143136 |||||||| ||||| || || || | | || | ||||| |||| || || Sbjct 683991 GATGCCTTCCTTGTCCTGGATCTTGGCCTTGACGTTCTCGATGGTGTCGCTGGGCTCCAC 683932 Query 143137 TTCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 143184 || | || | ||||||||||| | || || ||||| || ||||| Sbjct 683931 CTCCAAGGTGATGGTCTTGCCGGTGAGGGTCTTCACGAAGATCTGCAT 683884 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 506797004900640