Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Callipepla_20squamata_20[genbank_20GCA_5F002218305.1_202017-07-13] 34,302 sequences; 1,045,281,893 total letters Query= NC_004690.1 Length=113220 Score E Sequences producing significant alignments: (Bits) Value seq384 104 2e-17 seq448 93.3 3e-14 >seq384 Length=852418 Score = 104 bits (114), Expect = 2e-17 Identities = 147/207 (71%), Gaps = 0/207 (0%) Strand=Plus/Plus Query 15161 TGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTCTAATTGT 15220 || |||||||| ||||| || |||||||| || || | | | ||||||| | || Sbjct 86474 TGCAGGGTGGATTCTTTCTGGATGTTGTAGTCAGACAGGGTGCGCCCGTCTTCCAGCTGC 86533 Query 15221 TTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAAATTTTG 15280 || |||||| | |||| | || || ||| ||||| ||||||||||| || ||| Sbjct 86534 TTACCAGCGAAGATCAGCCTCTGCTGATCGGGAGGAATGCCTTCTTTGTCTTGGATCTTG 86593 Query 15281 CTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTACCTGTC 15340 ||| ||| | |||||||| |||||| || || || | || ||||| || || ||| Sbjct 86594 GCCTTCACATTCTCTATGGTGTCGCTAGGCTCGACCTCAAGAGTGATGGTCTTGCCAGTC 86653 Query 15341 AGAGTTTTTACAAAAATTTGCATATTT 15367 || || || ||||| || ||||| ||| Sbjct 86654 AGGGTCTTCACAAAGATCTGCATGTTT 86680 Score = 98.7 bits (108), Expect = 7e-16 Identities = 159/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 15135 TGCCACCTCTCAATCTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGC 15194 |||||||||||| | | || | || |||||||| || || || |||||||| ||| Sbjct 86220 TGCCACCTCTCAGACGCAGCACCAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCGG 86279 Query 15195 TTAGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTG 15254 || | | | | ||||| | || ||||||||| | |||| | || || ||| | Sbjct 86280 ACAGGGTGCGCCCATCTTCCAGCTGCTTGCCAGCGAAGATCAGCCTCTGCTGATCGGGAG 86339 Query 15255 GAATTCCTTCTTTGTCACAAATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTA 15314 |||| ||||||||||| || ||| |||||| |||| ||||| || || || | Sbjct 86340 GAATGCCTTCTTTGTCTTGGATCTTGGCCTTTACGTTTTCAATGGTGTCACTGGGCTCGA 86399 Query 15315 CATCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15363 | || | || ||||| || || ||||| || || ||||| || ||||| Sbjct 86400 CCTCGAGCGTGATGGTCTTGCCAGTCAGGGTCTTCACAAAGATCTGCAT 86448 Score = 82.4 bits (90), Expect = 6e-11 Identities = 140/203 (69%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 15161 TGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTCTAATTGT 15220 || |||||||| ||||| || |||||||| ||| || | | | ||||||| | || Sbjct 86018 TGCAGGGTGGATTCTTTCTGGATGTTGTAGTCGGACAGGGTGCGCCCGTCTTCCAGCTGC 86077 Query 15221 TTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAAATTTTG 15280 || ||||| | |||| | || || ||| ||||| ||||||||||| || ||| Sbjct 86078 TTACCAGCAAAGATCAGCCTCTGCTGATCGGGAGGAATGCCTTCTTTGTCTTGGATCTTG 86137 Query 15281 CTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTACCTGTC 15340 ||| ||| | |||||||| || || || || || | || || || || || ||| Sbjct 86138 GCCTTCACATTCTCTATGGTGTCACTGGGCTCGACCTCAAGAGTGATTGTCTTGCCAGTC 86197 Query 15341 AGAGTTTTTACAAAAATTTGCAT 15363 | ||||| || || || ||||| Sbjct 86198 AAGGTTTTCACGAAGATCTGCAT 86220 >seq448 Length=747048 Score = 93.3 bits (102), Expect = 3e-14 Identities = 143/204 (70%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 15160 ATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTCTAATTG 15219 ||| |||||||| || || || |||||||| ||| || | | | ||||||| | || Sbjct 684557 ATGCAGGGTGGACTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGCCCGTCTTCCAGCTG 684498 Query 15220 TTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAAATTTT 15279 |||||||| | |||| | || || ||| || || ||||| ||||| || || Sbjct 684497 CTTGCCAGCAAAAATCAGCCTCTGCTGATCGGGGGGGATGCCTTCCTTGTCCTGGATCTT 684438 Query 15280 GCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTACCTGT 15339 | ||| || | || ||||| || || || || || ||||| ||||||||||| || Sbjct 684437 GGCCTTGACGTTCTCGATGGTGTCACTGGGCTCCACCTCCAAGGTGATGGTTTTACCAGT 684378 Query 15340 CAGAGTTTTTACAAAAATTTGCAT 15363 ||| || || ||||| || ||||| Sbjct 684377 CAGGGTCTTCACAAAGATCTGCAT 684354 Score = 82.4 bits (90), Expect = 6e-11 Identities = 140/203 (69%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 15161 TGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTCTAATTGT 15220 || |||||||| || || || |||||||| ||| || | | | | ||||| | || Sbjct 684784 TGCAGGGTGGACTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGCCCATCTTCCAGCTGC 684725 Query 15221 TTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAAATTTTG 15280 |||||||| | |||| | || || ||| || || ||||| ||||| || ||| Sbjct 684724 TTGCCAGCAAAAATCAGCCTCTGCTGATCGGGGGGGATGCCTTCCTTGTCCTGGATCTTG 684665 Query 15281 CTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTACCTGTC 15340 ||| || | || |||||||| || || || || ||||| ||||||||||| ||| Sbjct 684664 GCCTTGACGTTCTCGATGGTATCACTGGGCTCCACCTCCAAGGTGATGGTTTTACCAGTC 684605 Query 15341 AGAGTTTTTACAAAAATTTGCAT 15363 | || || || || || ||||| Sbjct 684604 AAGGTCTTCACGAAGATCTGCAT 684582 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 362027788948182