Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Callipepla_20squamata_20[genbank_20GCA_5F002218305.1_202017-07-13] 34,302 sequences; 1,045,281,893 total letters Query= NC_005179.1 Length=134721 Score E Sequences producing significant alignments: (Bits) Value seq518 105 6e-18 seq184 84.2 2e-11 >seq518 Length=643042 Score = 105 bits (116), Expect = 6e-18 Identities = 112/148 (76%), Gaps = 0/148 (0%) Strand=Plus/Plus Query 13161 CACAGTGCAATCCTTCATCTCTACTTATTAGCTCGTTTGAAAATGTTAGACCCGGCATAA 13220 |||| | || | | |||||||| || || || || || || || || | || ||||| | Sbjct 337074 CACAATACATTACCTCATCTCTGCTAATAAGTTCATTGGAGAAAGTCAATCCAGGCATCA 337133 Query 13221 GCCCTCGTTTTTTAATCCAAAATATAGCAGCAAACGAACCCGaaaaaaaTATTCCTTCAA 13280 | || | || || | |||||||||||||||||| ||||||||||| || || ||||||| Sbjct 337134 GGCCCCTCTTCTTCAGCCAAAATATAGCAGCAAATGAACCCGAAAAGAAGATGCCTTCAA 337193 Query 13281 CTGCTGCAAACGCTATCAACCTTTCACC 13308 |||| ||||| || | || || ||||| Sbjct 337194 CTGCAGCAAAGGCGACCACTCTCTCACC 337221 Score = 82.4 bits (90), Expect = 7e-11 Identities = 66/80 (83%), Gaps = 0/80 (0%) Strand=Plus/Plus Query 12862 TTGATATTCGCTAACTCTTTTTTCAAAAAAGTTTGTTTTTCCTTCTAACGAAATATTTTC 12921 |||||| || |||||| || ||||| || |||||||||||||| | |||||||| || Sbjct 333043 TTGATACTCTGAAACTCTCTTCTCAAAGAAATTTGTTTTTCCTTCCAGAGAAATATTCTC 333102 Query 12922 CATAAAATCGAAAGGATTTT 12941 ||| ||||| |||||||||| Sbjct 333103 CATGAAATCAAAAGGATTTT 333122 >seq184 Length=1437213 Score = 84.2 bits (92), Expect = 2e-11 Identities = 93/124 (75%), Gaps = 0/124 (0%) Strand=Plus/Minus Query 13175 TCATCTCTACTTATTAGCTCGTTTGAAAATGTTAGACCCGGCATAAGCCCTCGTTTTTTA 13234 ||||||||||| || || || || || || || || || ||||| | |||| ||| || Sbjct 74007 TCATCTCTACTGATGAGTTCATTAGAGAAAGTGAGTCCAGGCATTAAACCTCTTTTCTTC 73948 Query 13235 ATCCAAAATATAGCAGCAAACGAACCCGaaaaaaaTATTCCTTCAACTGCTGCAAACGCT 13294 | ||| || || | ||||| || || ||||| || || ||||| ||||||||||| ||| Sbjct 73947 AGCCAGAAAATTGATGCAAAAGAGCCAGAAAAGAAGATGCCTTCCACTGCTGCAAATGCT 73888 Query 13295 ATCA 13298 | || Sbjct 73887 ACCA 73884 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 430802225383404