Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Callipepla_20squamata_20[genbank_20GCA_5F002218305.1_202017-07-13] 34,302 sequences; 1,045,281,893 total letters Query= NC_005309.1 Length=359853 Score E Sequences producing significant alignments: (Bits) Value seq384 172 1e-37 seq80 172 1e-37 seq448 145 2e-29 seq518 113 1e-19 seq184 98.7 2e-15 >seq384 Length=852418 Score = 172 bits (190), Expect = 1e-37 Identities = 178/233 (76%), Gaps = 0/233 (0%) Strand=Plus/Plus Query 104330 ATTCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCA 104389 || || || || || | || || || || | || ||||||||||| || || |||||| Sbjct 86447 ATGCCTCCCCTCAGACGCAGCACCAGGTGCAGGGTGGATTCTTTCTGGATGTTGTAGTCA 86506 Query 104390 GATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGA 104449 || || || | |||||||| || || || ||||| || || |||||||| ||||| ||| Sbjct 86507 GACAGGGTGCGCCCGTCTTCCAGCTGCTTACCAGCGAAGATCAGCCTCTGCTGATCGGGA 86566 Query 104450 GGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCT 104509 || || |||||||| || || ||||| || || ||||| |||| ||| |||||||| || Sbjct 86567 GGAATGCCTTCTTTGTCTTGGATCTTGGCCTTCACATTCTCTATGGTGTCGCTAGGCTCG 86626 Query 104510 ACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCATTTT 104562 ||||| || || || ||||| ||||| || || || ||||| |||||||| || Sbjct 86627 ACCTCAAGAGTGATGGTCTTGCCAGTCAGGGTCTTCACAAAGATCTGCATGTT 86679 Score = 158 bits (174), Expect = 3e-33 Identities = 173/230 (75%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 104330 ATTCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCA 104389 || || || || || | || || || || | || ||||||||||| || || ||||| Sbjct 85991 ATGCCTCCCCTCAGACGCAGCACCAGGTGCAGGGTGGATTCTTTCTGGATGTTGTAGTCG 86050 Query 104390 GATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGA 104449 || || || | |||||||| || || || |||||||| || |||||||| ||||| ||| Sbjct 86051 GACAGGGTGCGCCCGTCTTCCAGCTGCTTACCAGCAAAGATCAGCCTCTGCTGATCGGGA 86110 Query 104450 GGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCT 104509 || || |||||||| || || ||||| || || ||||| |||| ||| || || || || Sbjct 86111 GGAATGCCTTCTTTGTCTTGGATCTTGGCCTTCACATTCTCTATGGTGTCACTGGGCTCG 86170 Query 104510 ACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 ||||| || || || ||||| ||||| | ||||| || || |||||||| Sbjct 86171 ACCTCAAGAGTGATTGTCTTGCCAGTCAAGGTTTTCACGAAGATCTGCAT 86220 >seq80 Length=2138722 Score = 172 bits (190), Expect = 1e-37 Identities = 136/163 (83%), Gaps = 0/163 (0%) Strand=Plus/Minus Query 78488 GCATTATGGTGGTATTATATCTCTAAAGGAATAGAATACCTAGATACTATCTTCTTCATC 78547 || ||||||||||||||| |||| |||||||| ||||||||||| || | ||||||||| Sbjct 551132 GCTTTATGGTGGTATTATGTCTCCAAAGGAATTGAATACCTAGACACAGTGTTCTTCATC 551073 Query 78548 CTACGAAAGAAATTTAATCAAATTAGTTTTCTACATGTATATCATCATTTTACTATGTTT 78607 || | |||||||| || |||||||||||||| || || ||||| ||||| || ||||| Sbjct 551072 CTGAGGAAGAAATTCAACCAAATTAGTTTTCTTCACGTCTATCACCATTTCACCATGTTC 551013 Query 78608 ACTTTGGGATGGATAGGTATTAAATGGTTCGCAGGAGGACAAG 78650 |||||| | ||||| |||||||| ||| | ||||| ||||||| Sbjct 551012 ACTTTGTGGTGGATTGGTATTAAGTGGGTTGCAGGTGGACAAG 550970 Score = 87.8 bits (96), Expect = 4e-12 Identities = 101/135 (75%), Gaps = 1/135 (1%) Strand=Plus/Minus Query 78644 GGACAAGCGTTTCTAGGAGCTGAAATAAATTCATTCGTACACGTTATTATGTATACTTAT 78703 ||||| || ||| | ||||| | || ||| |||| | || ||||||||||| | ||| Sbjct 549180 GGACA-GCTTTTTTTGGAGCCCAGATGAATGCATTTATTCATGTTATTATGTACATGTAT 549122 Query 78704 TACGGTATTGCTGCATGCGGCCCTACATTTCGTAAGTATTTGTGGTGGAAGAGATATCTT 78763 ||||| | ||||| || ||||||| | ||| || || |||||||||| |||| | Sbjct 549121 TACGGATTAGCTGCCTGTGGCCCTAAAGTTCAGAAATACCTGTGGTGGAAACGATACTTG 549062 Query 78764 ACTATAATGCAATTG 78778 |||||| |||||||| Sbjct 549061 ACTATATTGCAATTG 549047 >seq448 Length=747048 Score = 145 bits (160), Expect = 2e-29 Identities = 170/230 (74%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 104330 ATTCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCA 104389 || || || || || | || || ||||| | || || || ||||| || || ||||| Sbjct 684583 ATGCCTCCCCTCAGGCGCAGGACAAGATGCAGGGTGGACTCCTTCTGGATGTTGTAGTCG 684524 Query 104390 GATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGA 104449 || || || | |||||||| || || || ||||||||||| |||||||| ||||| || Sbjct 684523 GACAGGGTGCGCCCGTCTTCCAGCTGCTTGCCAGCAAAAATCAGCCTCTGCTGATCGGGG 684464 Query 104450 GGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCT 104509 || || ||||| || ||||| ||||| || || || || || | ||| || || || || Sbjct 684463 GGGATGCCTTCCTTGTCCTGGATCTTGGCCTTGACGTTCTCGATGGTGTCACTGGGCTCC 684404 Query 104510 ACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 ||||| | || || || |||||||| || || || ||||| |||||||| Sbjct 684403 ACCTCCAAGGTGATGGTTTTACCAGTCAGGGTCTTCACAAAGATCTGCAT 684354 Score = 138 bits (152), Expect = 3e-27 Identities = 171/234 (73%), Gaps = 0/234 (0%) Strand=Plus/Minus Query 104330 ATTCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCA 104389 || || || || || | || || ||||| | || || || ||||| || || ||||| Sbjct 684113 ATGCCTCCCCTCAGGCGCAGGACGAGATGCAGGGTGGACTCCTTCTGGATGTTGTAGTCG 684054 Query 104390 GATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGA 104449 || || || | || ||||| || || || ||||||||||| |||||||| ||||| || Sbjct 684053 GACAGGGTGCGCCCATCTTCCAGCTGCTTGCCAGCAAAAATCAGCCTCTGCTGATCGGGG 683994 Query 104450 GGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCT 104509 || || ||||| || ||||| ||||| || || || || || | ||| ||||| || || Sbjct 683993 GGGATGCCTTCCTTGTCCTGGATCTTGGCCTTGACGTTCTCGATGGTGTCGCTGGGCTCC 683934 Query 104510 ACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCATTTTG 104563 ||||| | || || ||||| || || || || || || || |||||||| ||| Sbjct 683933 ACCTCCAAGGTGATGGTCTTGCCGGTGAGGGTCTTCACGAAGATCTGCATGTTG 683880 Score = 131 bits (144), Expect = 4e-25 Identities = 173/239 (72%), Gaps = 2/239 (1%) Strand=Plus/Minus Query 104321 ACTTTATTTATTCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATA 104380 |||| | ||| |||||| || | || || || || | || || || ||||| || Sbjct 684818 ACTTCAGTTACCACCCCTC--AGGCGCAGCACCAGGTGCAGGGTGGACTCCTTCTGGATG 684761 Query 104381 TTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGT 104440 || ||||| || || || | || ||||| || || || ||||||||||| |||||||| Sbjct 684760 TTGTAGTCGGACAGGGTGCGCCCATCTTCCAGCTGCTTGCCAGCAAAAATCAGCCTCTGC 684701 Query 104441 TGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCG 104500 ||||| || || || ||||| || ||||| ||||| || || || || || | |||||| Sbjct 684700 TGATCGGGGGGGATGCCTTCCTTGTCCTGGATCTTGGCCTTGACGTTCTCGATGGTATCA 684641 Query 104501 CTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 || || || ||||| | || || || |||||||| | || || || || |||||||| Sbjct 684640 CTGGGCTCCACCTCCAAGGTGATGGTTTTACCAGTCAAGGTCTTCACGAAGATCTGCAT 684582 Score = 93.3 bits (102), Expect = 1e-13 Identities = 164/244 (67%), Gaps = 14/244 (6%) Strand=Plus/Minus Query 104330 ATTCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCA 104389 || || || || || | || || || || | || || || ||||| || || ||||| Sbjct 684355 ATGCCTCCCCTCAGGCGCAGCACCAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCG 684296 Query 104390 GATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGA 104449 || || || | || ||||| || || || ||||||||||| |||||||| ||||| || Sbjct 684295 GACAGGGTGCGCCCATCTTCCAGCTGCTTGCCAGCAAAAATCAGCCTCTGCTGATCGGGG 684236 Query 104450 GGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTT--------------CTACGG 104495 || || ||||| || ||||| ||||| || || || || | Sbjct 684235 GGGATGCCTTCCTTGTCCTGGATCTTGGCCTTGACGTTCTNNNNNNNNNNNNNNNNNNNN 684176 Query 104496 TATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCT 104555 |||| || || || ||||| || || || |||||||| || | || || || || |||| Sbjct 684175 TATCACTGGGCTCGACCTCCAGAGTGATGGTCTTACCTGTCAAGGTCTTCACGAAGATCT 684116 Query 104556 GCAT 104559 |||| Sbjct 684115 GCAT 684112 >seq518 Length=643042 Score = 113 bits (124), Expect = 1e-19 Identities = 98/122 (80%), Gaps = 0/122 (0%) Strand=Plus/Minus Query 269138 GTTGCTTTTGCCGCTGTAGAAGGTATATTCTTTTCGGGGTCTTTTGCCGCTATCTTTTGG 269197 || || ||||| || || ||||| || ||||||||||| || ||||| ||||| |||||| Sbjct 337209 GTCGCCTTTGCTGCAGTTGAAGGCATCTTCTTTTCGGGTTCATTTGCTGCTATATTTTGG 337150 Query 269198 TTGAAGAAAAGAGGCCTTATGCCAGGATTAACTTTCTCTAACGAATTGATAAGCAGGGAC 269257 ||||||| || ||||| ||||| ||||| |||||||| || ||| | || ||||| || Sbjct 337149 CTGAAGAAGAGGGGCCTGATGCCTGGATTGACTTTCTCCAATGAACTTATTAGCAGAGAT 337090 Query 269258 GA 269259 || Sbjct 337089 GA 337088 >seq184 Length=1437213 Score = 98.7 bits (108), Expect = 2e-15 Identities = 102/134 (76%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 269126 GGAGAAAGGTTAGTTGCTTTTGCCGCTGTAGAAGGTATATTCTTTTCGGGGTCTTTTGCC 269185 |||||| | | || || ||||| || || ||||| || |||||||| || |||||||| Sbjct 73874 GGAGAACGTGTGGTAGCATTTGCAGCAGTGGAAGGCATCTTCTTTTCTGGCTCTTTTGCA 73933 Query 269186 GCTATCTTTTGGTTGAAGAAAAGAGGCCTTATGCCAGGATTAACTTTCTCTAACGAATTG 269245 | || || ||| ||||||||||||| | ||||| ||| | ||||||||||| ||| | Sbjct 73934 TCAATTTTCTGGCTGAAGAAAAGAGGTTTAATGCCTGGACTCACTTTCTCTAATGAACTC 73993 Query 269246 ATAAGCAGGGACGA 269259 || || || || || Sbjct 73994 ATCAGTAGAGATGA 74007 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1150892366879816