Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Callipepla_20squamata_20[genbank_20GCA_5F002218305.1_202017-07-13] 34,302 sequences; 1,045,281,893 total letters Query= NC_005832.1 Length=106332 Score E Sequences producing significant alignments: (Bits) Value seq470 109 4e-19 >seq470 Length=704619 Score = 109 bits (120), Expect = 4e-19 Identities = 125/168 (74%), Gaps = 0/168 (0%) Strand=Plus/Plus Query 25773 CATGTCCGTGTACTCTGCTCCGAAATACCTCCACTGGAACCCGTACACCGGTCCTAGGTC 25832 |||||| |||| |||||||| || | ||||||||||| || || || || || | ||| Sbjct 29790 CATGTCTTTGTATTCTGCTCCAAAGTGTCTCCACTGGAAACCATAAACTGGCCCCAAGTC 29849 Query 25833 TCCATCTTCCCTGTGCTCAAAGCCCCTCTTATCCAAAAAGTCTCTGGAACCATTGGCGTC 25892 || ||||| ||| | || ||| ||||||| || || | || |||||||| || Sbjct 29850 CCCCTCTTCTCTGGTGTAGAACCCCTGTTTATCCAGGAACTCACGTGACCCATTGGCATC 29909 Query 25893 CCAGATCTTTACCCCCTTCTCGGAGAGCTCTTTGGAGTTTGTGGACCC 25940 ||| |||||||| ||||| | ||||||||||||| ||||| || || Sbjct 29910 CCAAATCTTTACGCCCTTTGCAGAGAGCTCTTTGGCATTTGTAGAACC 29957 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 339995403563046