Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Callipepla_20squamata_20[genbank_20GCA_5F002218305.1_202017-07-13] 34,302 sequences; 1,045,281,893 total letters Query= NC_005839.2 Length=131680 Score E Sequences producing significant alignments: (Bits) Value seq448 89.7 4e-13 >seq448 Length=747048 Score = 89.7 bits (98), Expect = 4e-13 Identities = 142/204 (70%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 48523 ATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAATTGTCGCTCGTCCTCCAGCTG 48582 ||| || ||| |||||| || |||||||| || | || ||| |||| |||||||| Sbjct 684557 ATGCAGGGTGGACTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGCCCGTCTTCCAGCTG 684498 Query 48583 CTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATAATTTT 48642 ||| || | |||| | | ||||||||| || | | |||||||||| || || Sbjct 684497 CTTGCCAGCAAAAATCAGCCTCTGCTGATCGGGGGGGATGCCTTCCTTGTCCTGGATCTT 684438 Query 48643 CTGCTTGATAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTACCGGT 48702 ||||| | | ||||| || | | |||| ||| | || ||||||||||| || Sbjct 684437 GGCCTTGACGTTCTCGATGGTGTCACTGGGCTCCACCTCCAAGGTGATGGTTTTACCAGT 684378 Query 48703 GAGAGTTTTCACAAAAATCTGCAT 48726 || || |||||||| |||||||| Sbjct 684377 CAGGGTCTTCACAAAGATCTGCAT 684354 Score = 84.2 bits (92), Expect = 2e-11 Identities = 141/204 (69%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 48523 ATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAATTGTCGCTCGTCCTCCAGCTG 48582 ||| || ||| |||||| || |||||||| || | || ||| | || |||||||| Sbjct 684087 ATGCAGGGTGGACTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGCCCATCTTCCAGCTG 684028 Query 48583 CTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATAATTTT 48642 ||| || | |||| | | ||||||||| || | | |||||||||| || || Sbjct 684027 CTTGCCAGCAAAAATCAGCCTCTGCTGATCGGGGGGGATGCCTTCCTTGTCCTGGATCTT 683968 Query 48643 CTGCTTGATAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTACCGGT 48702 ||||| | | ||||| ||| | | |||| ||| | || ||||| || ||||| Sbjct 683967 GGCCTTGACGTTCTCGATGGTGTCGCTGGGCTCCACCTCCAAGGTGATGGTCTTGCCGGT 683908 Query 48703 GAGAGTTTTCACAAAAATCTGCAT 48726 ||| || ||||| || |||||||| Sbjct 683907 GAGGGTCTTCACGAAGATCTGCAT 683884 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 421075093566302