Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Callipepla_20squamata_20[genbank_20GCA_5F002218305.1_202017-07-13] 34,302 sequences; 1,045,281,893 total letters Query= NC_006150.1 Length=221454 Score E Sequences producing significant alignments: (Bits) Value seq44 134 2e-26 seq598 131 2e-25 >seq44 Length=2569273 Score = 134 bits (148), Expect = 2e-26 Identities = 172/237 (73%), Gaps = 0/237 (0%) Strand=Plus/Plus Query 8739 TCTTGACGATCCCAAACCCCACGTCTCCGCCGAAGGTGCTGGGTTTCCAGTAACCCGGGG 8798 |||| |||||| | || || ||||||| ||||| ||||| |||||||| |||||| Sbjct 1557600 TCTTCACGATCTCGAAGCCGGTCGCTCCGCCAAAGGTACTGGGCTTCCAGTACTCCGGGG 1557659 Query 8799 AGCAGATGACGTTCGCCATGAGGCCTTTGAGGGAAAACGGAGCCCCCAGCTCGAGAATGC 8858 |||||||| |||| | | || || || |||||||||||||| || | ||| | |||| Sbjct 1557660 AGCAGATGGGGTTCCCAAGAAGTCCCTTCAGGGAAAACGGAGCGCCAATCTCCACCATGC 1557719 Query 8859 TCTCACCGAAGATGGCGTTGGGACGGGGCTTTTCCACCAAGAATCCGGTGTACAACTCCA 8918 | || ||||| ||| ||| ||| |||| || || | || || || | || ||||||| Sbjct 1557720 TTTCCCCGAAAATGCCGTCGGGTTGGGGTTTCTCAAGCAGCAACCCTGGATAAAACTCCA 1557779 Query 8919 CAGCCTCGATGTCTCCGTAAAGGGCCCTGAGTTCGGCAGCGATTTCCTTTTCTCCTG 8975 ||| || |||||||| || || || || || || || | |||| ||||||| Sbjct 1557780 GAGCGTCAATGTCTCCATACAGCTCCTCCAGCTCTGCTGCCTTCTCCTCCTCTCCTG 1557836 >seq598 Length=532752 Score = 131 bits (144), Expect = 2e-25 Identities = 174/242 (72%), Gaps = 0/242 (0%) Strand=Plus/Plus Query 9622 ATGAGTCGAGTGGTCTGAAACAGTTGTTCGTCACTCCATTCTGGATGTTCTCGTTTCAGA 9681 ||||||| || ||||| || || || || ||| ||| |||||||| ||| |||||| Sbjct 405778 ATGAGTCTTGTAGTCTGGAATAGCTGCTCATCATCCCACTCTGGATGCTCTTGTTTCAAG 405837 Query 9682 ACATCGCACACTCTGTTGTGTTCCCTGAGCCAGATAGTAGCGTACATCATGAGACCAGGC 9741 | || || ||||| |||||||| || ||||| || || || |||||||| || || || Sbjct 405838 ATGTCACAGACTCTATTGTGTTCTCTCAGCCATATTGTTGCATACATCATTAGGCCTGGG 405897 Query 9742 ACCAGGCCAAAAGCCTCTTGACCGACAGCCAGACGCATATTTTCGGGCACTTCGGGAGGA 9801 |||| |||||| |||| || || |||| | ||| | || || || | |||||| Sbjct 405898 ACCAAGCCAAACACCTCCTGGCCAACAGAAAACTGCAGGTGCTCAGGAACATGAGGAGGA 405957 Query 9802 TAGATCATGTGCACCTGGACATCTTTGACCGAGGGGGGATACATTTCACCGTCAATAATC 9861 |||||||| | | || || || || | || ||||||||||| || ||||| ||| Sbjct 405958 TAGATCATCTCTGCTTGAGTGTCCTTCACTGTCGGTGGATACATTTCTCCATCAATTATC 406017 Query 9862 TG 9863 || Sbjct 406018 TG 406019 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 708221002278880