Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Callipepla_20squamata_20[genbank_20GCA_5F002218305.1_202017-07-13] 34,302 sequences; 1,045,281,893 total letters Query= NC_006639.1 Length=24748 Score E Sequences producing significant alignments: (Bits) Value seq102 132 8e-27 seq1733 131 3e-26 seq1337 131 3e-26 >seq102 Length=1910416 Score = 132 bits (146), Expect = 8e-27 Identities = 175/243 (72%), Gaps = 0/243 (0%) Strand=Plus/Plus Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 ||| ||||| || |||| || || || |||||||| || ||||||||||| || || Sbjct 37810 CGCCAAGCGGCACCGCAAGGTGCTGCGCGACAACATCCAGGGCATCACCAAGCCGGCCAT 37869 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 ||| || ||||| || || || || |||||||| |||| || || |||| || |||| Sbjct 37870 CCGCCGCCTGGCGCGGCGCGGCGGCGTCAAGCGCATCTCGGGGCTGATCTACGAGGAGAC 37929 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 || | || | ||| |||||||| ||| ||| |||| || || || ||| ||||| Sbjct 37930 GCGCGGCGTACTCAAGGTCTTCCTCGAGAACGTCATCCGCGACGCCGTCACCTACACCGA 37989 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 |||||| || | ||||| ||||| ||||||| | ||||| || | || || || || Sbjct 37990 GCACGCCAAGAGGAAGACGGTCACGGCCATGGACGTGGTCTACGCGCTCAAGCGCCAGGG 38049 Query 16672 CCG 16674 || Sbjct 38050 ACG 38052 Score = 127 bits (140), Expect = 3e-25 Identities = 174/243 (72%), Gaps = 0/243 (0%) Strand=Plus/Plus Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 ||| ||||| || |||| || || || |||||||| || ||||||||||| || || Sbjct 18586 CGCCAAGCGGCACCGCAAGGTGCTGCGCGACAACATCCAGGGCATCACCAAGCCGGCCAT 18645 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 ||| || ||||| || || || || |||||||| |||| || | |||| || |||| Sbjct 18646 CCGCCGCCTGGCGCGGCGCGGCGGCGTCAAGCGCATCTCGGGGCTCATCTACGAGGAGAC 18705 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 || | || | ||| |||||||| ||| ||| |||| || || || ||| ||||| Sbjct 18706 GCGCGGCGTGCTCAAGGTCTTCCTCGAGAACGTCATCCGCGACGCCGTCACCTACACCGA 18765 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 |||||| || | ||||| ||||| ||||||| | ||||| || | || || || || Sbjct 18766 GCACGCCAAGAGGAAGACGGTCACGGCCATGGACGTGGTCTACGCGCTCAAGCGCCAGGG 18825 Query 16672 CCG 16674 || Sbjct 18826 ACG 18828 Score = 127 bits (140), Expect = 3e-25 Identities = 174/243 (72%), Gaps = 0/243 (0%) Strand=Plus/Minus Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 ||| ||||| || |||| || || || |||||||| || ||||||||||| || || Sbjct 20250 CGCCAAGCGGCACCGCAAGGTGCTGCGCGACAACATCCAGGGCATCACCAAGCCGGCCAT 20191 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 ||| || ||||| || || || || |||||||| |||| || | |||| || |||| Sbjct 20190 CCGCCGCCTGGCGCGGCGCGGCGGCGTCAAGCGCATCTCGGGGCTCATCTACGAGGAGAC 20131 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 || | || | ||| |||||||| ||| ||| |||| || || || ||| ||||| Sbjct 20130 GCGCGGCGTGCTCAAGGTCTTCCTCGAGAACGTCATCCGCGACGCCGTCACCTACACCGA 20071 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 |||||| || | ||||| ||||| ||||||| | ||||| || | || || || || Sbjct 20070 GCACGCCAAGAGGAAGACGGTCACGGCCATGGACGTGGTCTACGCGCTCAAGCGCCAGGG 20011 Query 16672 CCG 16674 || Sbjct 20010 ACG 20008 Score = 127 bits (140), Expect = 3e-25 Identities = 174/243 (72%), Gaps = 0/243 (0%) Strand=Plus/Minus Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 ||| ||||| || |||| || || || |||||||| || ||||||||||| || || Sbjct 45067 CGCCAAGCGGCACCGCAAGGTGCTGCGCGACAACATCCAGGGCATCACCAAGCCGGCCAT 45008 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 ||| || ||||| || || || || |||||||| |||| || | |||| || |||| Sbjct 45007 CCGCCGCCTGGCGCGGCGCGGCGGCGTCAAGCGCATCTCGGGGCTCATCTACGAGGAGAC 44948 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 || | || | ||| |||||||| ||| ||| |||| || || || ||| ||||| Sbjct 44947 GCGCGGCGTGCTCAAGGTCTTCCTCGAGAACGTCATCCGCGACGCCGTCACCTACACCGA 44888 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 |||||| || | ||||| ||||| ||||||| | ||||| || | || || || || Sbjct 44887 GCACGCCAAGAGGAAGACGGTCACGGCCATGGACGTGGTCTACGCGCTCAAGCGCCAGGG 44828 Query 16672 CCG 16674 || Sbjct 44827 ACG 44825 Score = 105 bits (116), Expect = 1e-18 Identities = 135/186 (73%), Gaps = 0/186 (0%) Strand=Plus/Minus Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 ||| ||||| || |||| || || || |||||||| || ||||||||||| || || Sbjct 187 CGCCAAGCGGCACCGCAAGGTGCTGCGCGACAACATCCAGGGCATCACCAAGCCGGCCAT 128 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 ||| || ||||| || || || || |||||||| |||| || | |||| || |||| Sbjct 127 CCGCCGCCTGGCGCGGCGCGGCGGCGTCAAGCGCATCTCGGGGCTCATCTACGAGGAGAC 68 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 || | || | ||| |||||||| ||| ||| |||| || || || ||| ||||| Sbjct 67 GCGCGGCGTGCTCAAGGTCTTCCTCGAGAACGTCATCCGCGACGCCGTCACCTACACCGA 8 Query 16612 GCACGC 16617 |||||| Sbjct 7 GCACGC 2 Score = 105 bits (116), Expect = 1e-18 Identities = 135/186 (73%), Gaps = 0/186 (0%) Strand=Plus/Minus Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 ||| ||||| || |||| || || || |||||||| || ||||||||||| || || Sbjct 45710 CGCCAAGCGGCACCGCAAGGTGCTGCGCGACAACATCCAGGGCATCACCAAGCCGGCCAT 45651 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 ||| || ||||| || || || || |||||||| |||| || | |||| || |||| Sbjct 45650 CCGCCGCCTGGCGCGGCGCGGCGGCGTCAAGCGCATCTCGGGGCTCATCTACGAGGAGAC 45591 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 || | || | ||| |||||||| ||| ||| |||| || || || ||| ||||| Sbjct 45590 GCGCGGCGTGCTCAAGGTCTTCCTCGAGAACGTCATCCGCGACGCCGTCACCTACACCGA 45531 Query 16612 GCACGC 16617 |||||| Sbjct 45530 GCACGC 45525 >seq1733 Length=18290 Score = 131 bits (144), Expect = 3e-26 Identities = 195/276 (71%), Gaps = 2/276 (1%) Strand=Plus/Minus Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 ||| ||||| || |||| || || || |||||||| || ||||||||||| || || Sbjct 459 CGCCAAGCGGCACCGCAAGGTGCTGCGCGACAACATCCAGGGCATCACCAAGCCGGCCAT 400 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 ||| || ||||| || || || || |||||||| |||| || | |||| || |||| Sbjct 399 CCGCCGCCTGGCGCGGCGCGGCGGCGTCAAGCGCATCTCGGGGCTCATCTACGAGGAGAC 340 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 || | || | ||| |||||||| ||| ||| |||| || || || ||| ||||| Sbjct 339 GCGCGGCGTGCTCAAGGTCTTCCTCGAGAACGTCATCCGCGACGCCGTCACCTACACCGA 280 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 |||||| || | ||||| ||||| ||||||| | ||||| || | || || || || Sbjct 279 GCACGCCAAGAGGAAGACGGTCACGGCCATGGACGTGGTCTACGCGCTCAAGCGCCAGGG 220 Query 16672 CCGTAAGATTTATGGTTTTGGAAGTTAA--TCTTCT 16705 || | | || || || || ||||| |||||| Sbjct 219 ACGCACCCTCTACGGCTTCGGCGGTTAAACTCTTCT 184 Score = 127 bits (140), Expect = 3e-25 Identities = 174/243 (72%), Gaps = 0/243 (0%) Strand=Plus/Plus Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 ||| ||||| || |||| || || || |||||||| || ||||||||||| || || Sbjct 14745 CGCCAAGCGGCACCGCAAGGTGCTGCGCGACAACATCCAGGGCATCACCAAGCCGGCCAT 14804 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 ||| || ||||| || || || || |||||||| |||| || | |||| || |||| Sbjct 14805 CCGCCGCCTGGCGCGGCGCGGCGGCGTCAAGCGCATCTCGGGGCTCATCTACGAGGAGAC 14864 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 || | || | ||| |||||||| ||| ||| |||| || || || ||| ||||| Sbjct 14865 GCGCGGCGTGCTCAAGGTCTTCCTCGAGAACGTCATCCGCGACGCCGTCACCTACACCGA 14924 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 |||||| || | ||||| ||||| ||||||| | ||||| || | || || || || Sbjct 14925 GCACGCCAAGAGGAAGACGGTCACGGCCATGGACGTGGTCTACGCGCTCAAGCGCCAGGG 14984 Query 16672 CCG 16674 || Sbjct 14985 ACG 14987 >seq1337 Length=46112 Score = 131 bits (144), Expect = 3e-26 Identities = 195/276 (71%), Gaps = 2/276 (1%) Strand=Plus/Minus Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 ||| ||||| || |||| || || || |||||||| || ||||||||||| || || Sbjct 5291 CGCCAAGCGGCACCGCAAGGTGCTGCGCGACAACATCCAGGGCATCACCAAGCCGGCCAT 5232 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 ||| || ||||| || || || || |||||||| |||| || | |||| || |||| Sbjct 5231 CCGCCGCCTGGCGCGGCGCGGCGGCGTCAAGCGCATCTCGGGGCTCATCTACGAGGAGAC 5172 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 || | || | ||| |||||||| ||| ||| |||| || || || ||| ||||| Sbjct 5171 GCGCGGCGTGCTCAAGGTCTTCCTCGAGAACGTCATCCGCGACGCCGTCACCTACACCGA 5112 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 |||||| || | ||||| ||||| ||||||| | ||||| || | || || || || Sbjct 5111 GCACGCCAAGAGGAAGACGGTCACGGCCATGGACGTGGTCTACGCGCTCAAGCGCCAGGG 5052 Query 16672 CCGTAAGATTTATGGTTTTGGAAGTTAA--TCTTCT 16705 || | | || || || || ||||| |||||| Sbjct 5051 ACGCACCCTCTACGGCTTCGGCGGTTAAACTCTTCT 5016 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 79043837441286