Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Callipepla_20squamata_20[genbank_20GCA_5F002218305.1_202017-07-13] 34,302 sequences; 1,045,281,893 total letters Query= NC_006998.1 Length=194711 Score E Sequences producing significant alignments: (Bits) Value seq518 129 7e-25 seq184 102 1e-16 seq1256 100 4e-16 >seq518 Length=643042 Score = 129 bits (142), Expect = 7e-25 Identities = 110/136 (81%), Gaps = 0/136 (0%) Strand=Plus/Plus Query 33326 CCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 33385 |||| ||||| ||||| ||||| ||||| || || | ||| ||||| ||||| | ||| | Sbjct 337086 CCTCATCTCTGCTAATAAGTTCATTGGAGAAAGTCAATCCAGGCATCAGGCCCCTCTTCT 337145 Query 33386 TAAGCCAAAATATGGAAGCGAATGATCCAGAAAAGAAGATTCCTTCTACTGCAGCAAAGG 33445 | ||||||||||| | ||| ||||| || ||||||||||| ||||| ||||||||||||| Sbjct 337146 TCAGCCAAAATATAGCAGCAAATGAACCCGAAAAGAAGATGCCTTCAACTGCAGCAAAGG 337205 Query 33446 CAATAAGTCTCTCTCC 33461 | | | |||||| || Sbjct 337206 CGACCACTCTCTCACC 337221 >seq184 Length=1437213 Score = 102 bits (112), Expect = 1e-16 Identities = 95/121 (79%), Gaps = 0/121 (0%) Strand=Plus/Minus Query 33326 CCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 33385 |||| |||||||| || ||||| || || || |||||||| ||||||| || | || | Sbjct 74009 CCTCATCTCTACTGATGAGTTCATTAGAGAAAGTGAGTCCAGGCATTAAACCTCTTTTCT 73950 Query 33386 TAAGCCAAAATATGGAAGCGAATGATCCAGAAAAGAAGATTCCTTCTACTGCAGCAAAGG 33445 | ||||| || || || || || || |||||||||||||| ||||| ||||| ||||| | Sbjct 73949 TCAGCCAGAAAATTGATGCAAAAGAGCCAGAAAAGAAGATGCCTTCCACTGCTGCAAATG 73890 Query 33446 C 33446 | Sbjct 73889 C 73889 Score = 82.4 bits (90), Expect = 1e-10 Identities = 75/95 (79%), Gaps = 0/95 (0%) Strand=Plus/Minus Query 32998 GACATAACTCCCATTTTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTTCCT 33057 ||||| |||||||| | || |||||||| || || || || || ||||| || || ||| Sbjct 75263 GACATGACTCCCATCCTCTGATATTCACCTACTCGCTTCTCAAAGAAATTGGTCTTGCCT 75204 Query 33058 TCCAATGATATATTTTCCATGAAATCAAACGGATT 33092 |||| || || || |||||||||||||| ||||| Sbjct 75203 TCCAGAGAGATGTTCTCCATGAAATCAAAAGGATT 75169 >seq1256 Length=67100 Score = 100 bits (110), Expect = 4e-16 Identities = 111/148 (75%), Gaps = 0/148 (0%) Strand=Plus/Plus Query 62062 TCCATCCGTAAAAATGCATACTCGTTAGTTTGGAATAACTCGGATCTGCTATATGGATAT 62121 |||| || || || ||||| || || |||||| ||| | || ||||| || ||||| | Sbjct 24994 TCCACCCATAGAAGTGCATGCTGGTGAGTTTGCCATAGTTGGGCTCTGCGATGTGGATGT 25053 Query 62122 TCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATGATCGTCT 62181 | | |||||| || ||||||||||| ||||| |||||||| ||||| || | ||| || | Sbjct 25054 TGAGAGATTGGCTCTGATCGATGAACGCTCCTCTGTCTGCTGCCATCTTGAGGATAGTTT 25113 Query 62182 TTTGTGGAATTTCCCAAATAGTTTTATA 62209 | || | || ||||| | || ||||| Sbjct 25114 TCTGGGAGATCTCCCACACCGTCTTATA 25141 Score = 95.1 bits (104), Expect = 2e-14 Identities = 112/149 (75%), Gaps = 2/149 (1%) Strand=Plus/Plus Query 63216 ACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGT 63275 |||| ||||||||||||||||||||||| ||||| | || || ||||||| | || Sbjct 31004 ACTCTCTTCATAAAGAGATCAGGAATCCAGAGAGCAAAGAAAAGGTCTCTGGCACGCTGC 31063 Query 63276 TCCTCGTTTCCTGTATTCTT-TTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGG 63334 ||||| || || || ||||| |||||| || || ||| | | || || |||||||| Sbjct 31064 TCCTCCTTCCCAGTGTTCTTCTTTAAG-TCCAGAAACTCGAAGATGTCCAGGTGCCACGG 31122 Query 63335 TTCCAAGTATATGGCCATAACTCCAGGCC 63363 |||| ||| ||||| | | | ||||||| Sbjct 31123 CTCCAGGTAGATGGCAAAAGCCCCAGGCC 31151 Score = 91.5 bits (100), Expect = 2e-13 Identities = 122/170 (72%), Gaps = 0/170 (0%) Strand=Plus/Plus Query 62577 TATGTATCGTATGGTCCTTCCTTCTCAGCTAGTTCACAACTCGCCTCTAATGCACCGTAA 62636 || || || || |||||||||| |||||| || ||||| || || || || ||||||||| Sbjct 28251 TACGTTTCATACGGTCCTTCCTGCTCAGCAAGCTCACAGCTAGCTTCCAAAGCACCGTAA 28310 Query 62637 TAAATGGTTTCGAAGATCTTCTTATTTAGATCTTGTGCTTCCAGGCTATCAAATGGATAA 62696 || ||||| || || |||| || || || || || || |||| || || ||||| Sbjct 28311 TAGATGGTCTCAAATATCTGCTGGTTCAGGAGCTGGGCCTCGGGGCTTTCGAAGGGATAC 28370 Query 62697 TTTAAGAGAATAAACGCGTCCGCTAATCCTTGAACACCAATACCGATAGG 62746 | | ||| || || ||||| || | || || || || || ||||| || Sbjct 28371 CTCATGAGGATGAAGGCGTCAGCCAGGCCCTGCACGCCGATGCCGATGGG 28420 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 622680095814320