Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Callipepla_20squamata_20[genbank_20GCA_5F002218305.1_202017-07-13] 34,302 sequences; 1,045,281,893 total letters Query= NC_007383.1 Length=134394 Score E Sequences producing significant alignments: (Bits) Value seq448 100 2e-16 seq384 98.7 9e-16 >seq448 Length=747048 Score = 100 bits (110), Expect = 2e-16 Identities = 115/155 (74%), Gaps = 0/155 (0%) Strand=Plus/Plus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 ||||| | ||||| || || | ||||| ||| | || ||| | || || ||| ||| Sbjct 684354 ATGCAGATCTTTGTGAAGACCCTGACTGGTAAAACCATCACCTTGGAGGTGGAGCCCAGT 684413 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 |||||||||||| | ||||| ||||| ||||| |||||||| || |||||||| Sbjct 684414 GACACCATCGAGAACGTCAAGGCCAAGATCCAGGACAAGGAAGGCATCCCCCCCGATCAG 684473 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGA 24145 ||||| ||||||| | |||||||| || ||||| Sbjct 684474 CAGAGGCTGATTTTTGCTGGCAAGCAGCTGGAAGA 684508 Score = 96.9 bits (106), Expect = 3e-15 Identities = 118/161 (73%), Gaps = 0/161 (0%) Strand=Plus/Plus Query 23987 CAAAATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGC 24046 ||| ||||| | || || || || | || || || | || ||| | || || ||| | Sbjct 683880 CAACATGCAGATCTTCGTGAAGACCCTCACCGGCAAGACCATCACCTTGGAGGTGGAGCC 683939 Query 24047 CAACGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGA 24106 || ||||||||||||| | ||||| ||||| ||||| |||||||| || ||||| Sbjct 683940 CAGCGACACCATCGAGAACGTCAAGGCCAAGATCCAGGACAAGGAAGGCATCCCCCCCGA 683999 Query 24107 TCAACAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATG 24147 ||| ||||| ||||||| | |||||||| || ||||||| Sbjct 684000 TCAGCAGAGGCTGATTTTTGCTGGCAAGCAGCTGGAAGATG 684040 >seq384 Length=852418 Score = 98.7 bits (108), Expect = 9e-16 Identities = 140/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 ||||| | || || ||||| || ||||| || | || || | || |||||| ||| Sbjct 86220 ATGCAGATCTTCGTGAAAACCTTGACTGGCAAGACAATCACTCTTGAGGTCGAGCCCAGT 86161 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 |||||||| ||| | || || ||||| |||||||||||||| ||||||||||| Sbjct 86160 GACACCATAGAGAATGTGAAGGCCAAGATCCAAGACAAAGAAGGCATTCCTCCCGATCAG 86101 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAAC 24170 ||||| ||||| | | || ||||| || ||||| | | | | | ||| || ||| Sbjct 86100 CAGAGGCTGATCTTTGCTGGTAAGCAGCTGGAAGACGGGCGCACCCTGTCCGACTACAAC 86041 Query 24171 ATTCAAAAAGAATCTAC 24187 || || |||||||| || Sbjct 86040 ATCCAGAAAGAATCCAC 86024 Score = 98.7 bits (108), Expect = 9e-16 Identities = 116/157 (74%), Gaps = 0/157 (0%) Strand=Plus/Minus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 ||||| | ||||| || || | ||||| || | || || |||| |||||| ||| Sbjct 86448 ATGCAGATCTTTGTGAAGACCCTGACTGGCAAGACCATCACGCTCGAGGTCGAGCCCAGT 86389 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 |||||||| || | || || ||||| |||||||||||||| ||||||||||| Sbjct 86388 GACACCATTGAAAACGTAAAGGCCAAGATCCAAGACAAAGAAGGCATTCCTCCCGATCAG 86329 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATG 24147 ||||| ||||| | || |||||||| || ||||||| Sbjct 86328 CAGAGGCTGATCTTCGCTGGCAAGCAGCTGGAAGATG 86292 Score = 95.1 bits (104), Expect = 1e-14 Identities = 141/200 (71%), Gaps = 0/200 (0%) Strand=Plus/Minus Query 23988 AAAATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCC 24047 || ||||| | ||||| || || | ||||| || | || || | || |||||| | Sbjct 86679 AACATGCAGATCTTTGTGAAGACCCTGACTGGCAAGACCATCACTCTTGAGGTCGAGCCT 86620 Query 24048 AACGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGAT 24107 | ||||||||| ||| | || || ||||| |||||||||||||| ||||||||| Sbjct 86619 AGCGACACCATAGAGAATGTGAAGGCCAAGATCCAAGACAAAGAAGGCATTCCTCCCGAT 86560 Query 24108 CAACAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTAT 24167 || ||||| ||||| | || || ||||| || ||||| | | | | | || || Sbjct 86559 CAGCAGAGGCTGATCTTCGCTGGTAAGCAGCTGGAAGACGGGCGCACCCTGTCTGACTAC 86500 Query 24168 AACATTCAAAAAGAATCTAC 24187 ||||| || |||||||| || Sbjct 86499 AACATCCAGAAAGAATCCAC 86480 Score = 89.7 bits (98), Expect = 4e-13 Identities = 114/157 (73%), Gaps = 0/157 (0%) Strand=Plus/Minus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 ||||| | || || || || | ||||| || | || ||| | ||||| ||| ||| Sbjct 85992 ATGCAGATCTTCGTGAAGACCCTGACTGGCAAGACCATCACCCTTGAAGTTGAGCCCAGT 85933 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 |||||||| || | || || ||||| |||||||||||||| ||||||||||| Sbjct 85932 GACACCATTGAAAACGTGAAGGCCAAGATCCAAGACAAAGAAGGCATTCCTCCCGATCAG 85873 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATG 24147 ||||| ||||| | || || ||||| || ||||||| Sbjct 85872 CAGAGGCTGATCTTCGCTGGTAAGCAGCTGGAAGATG 85836 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 429756262836810