Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Callipepla_20squamata_20[genbank_20GCA_5F002218305.1_202017-07-13] 34,302 sequences; 1,045,281,893 total letters Query= NC_007921.1 Length=147544 Score E Sequences producing significant alignments: (Bits) Value seq384 125 7e-24 seq448 123 2e-23 seq1256 116 3e-21 >seq384 Length=852418 Score = 125 bits (138), Expect = 7e-24 Identities = 167/232 (72%), Gaps = 0/232 (0%) Strand=Plus/Plus Query 131007 GCCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCT 131066 |||||| | || ||||||||| | || | ||| |||||||| || |||||||| ||| Sbjct 86221 GCCACCTCTCAGACGCAGCACCAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCGGA 86280 Query 131067 CATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGG 131126 || ||||||| || || ||||||||||| ||| |||| | | |||||| || ||||| Sbjct 86281 CAGGGTGCGCCCATCTTCCAGCTGCTTGCCAGCGAAGATCAGCCTCTGCTGATCGGGAGG 86340 Query 131127 GATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGAT 131186 || ||||||||||| ||| || ||| | | || | || || ||| ||||| Sbjct 86341 AATGCCTTCTTTGTCTTGGATCTTGGCCTTTACGTTTTCAATGGTGTCACTGGGCTCGAC 86400 Query 131187 GTCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCATGACT 131238 |||| || | ||| || || || || || || || || ||||||||| || Sbjct 86401 CTCGAGCGTGATGGTCTTGCCAGTCAGGGTCTTCACAAAGATCTGCATGCCT 86452 Score = 113 bits (124), Expect = 4e-20 Identities = 164/232 (71%), Gaps = 0/232 (0%) Strand=Plus/Plus Query 131007 GCCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCT 131066 ||| || | || ||||||||| | || | ||| |||||||| || |||||||| || Sbjct 85765 GCCTCCTCTCAGACGCAGCACCAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCAGA 85824 Query 131067 CATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGG 131126 || ||||||| || || |||||||| || ||| |||| | | |||||| || ||||| Sbjct 85825 CAGGGTGCGCCCATCTTCCAGCTGCTTACCAGCGAAGATCAGCCTCTGCTGATCGGGAGG 85884 Query 131127 GATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGAT 131186 || ||||||||||| ||| || ||| | | || | || || ||| ||| | Sbjct 85885 AATGCCTTCTTTGTCTTGGATCTTGGCCTTCACGTTTTCAATGGTGTCACTGGGCTCAAC 85944 Query 131187 GTCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCATGACT 131238 || | ||| | ||| || || || || || || ||||| ||||||||| || Sbjct 85945 TTCAAGGGTGATGGTCTTGCCAGTCAGGGTCTTCACGAAGATCTGCATGCCT 85996 Score = 107 bits (118), Expect = 2e-18 Identities = 161/229 (70%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 131007 GCCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCT 131066 ||| || | || ||||||||| | || | ||| || || || || |||||||| ||| Sbjct 85993 GCCTCCCCTCAGACGCAGCACCAGGTGCAGGGTGGATTCTTTCTGGATGTTGTAGTCGGA 86052 Query 131067 CATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGG 131126 || ||||||| ||| || |||||||| || || |||| | | |||||| || ||||| Sbjct 86053 CAGGGTGCGCCCGTCTTCCAGCTGCTTACCAGCAAAGATCAGCCTCTGCTGATCGGGAGG 86112 Query 131127 GATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGAT 131186 || ||||||||||| ||| || ||| | | ||| | || || ||| ||||| Sbjct 86113 AATGCCTTCTTTGTCTTGGATCTTGGCCTTCACATTCTCTATGGTGTCACTGGGCTCGAC 86172 Query 131187 GTCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCATG 131235 || | || | || || || || | ||||| ||||| ||||||||| Sbjct 86173 CTCAAGAGTGATTGTCTTGCCAGTCAAGGTTTTCACGAAGATCTGCATG 86221 Score = 107 bits (118), Expect = 2e-18 Identities = 161/229 (70%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 131007 GCCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCT 131066 ||| || | || ||||||||| | || | ||| || || || || |||||||| || Sbjct 86449 GCCTCCCCTCAGACGCAGCACCAGGTGCAGGGTGGATTCTTTCTGGATGTTGTAGTCAGA 86508 Query 131067 CATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGG 131126 || ||||||| ||| || |||||||| || ||| |||| | | |||||| || ||||| Sbjct 86509 CAGGGTGCGCCCGTCTTCCAGCTGCTTACCAGCGAAGATCAGCCTCTGCTGATCGGGAGG 86568 Query 131127 GATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGAT 131186 || ||||||||||| ||| || ||| | | ||| | || ||| | | ||||| Sbjct 86569 AATGCCTTCTTTGTCTTGGATCTTGGCCTTCACATTCTCTATGGTGTCGCTAGGCTCGAC 86628 Query 131187 GTCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCATG 131235 || | || | ||| || || || || || || || || ||||||||| Sbjct 86629 CTCAAGAGTGATGGTCTTGCCAGTCAGGGTCTTCACAAAGATCTGCATG 86677 >seq448 Length=747048 Score = 123 bits (136), Expect = 2e-23 Identities = 166/231 (72%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 ||||| | || |||||||| | || | ||| |||||||| || |||||||| ||| | Sbjct 684808 CCACCCCTCAGGCGCAGCACCAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAC 684749 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | ||||||| || || ||||||||||| || | || | | |||||| || || ||| Sbjct 684748 AGGGTGCGCCCATCTTCCAGCTGCTTGCCAGCAAAAATCAGCCTCTGCTGATCGGGGGGG 684689 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATG 131187 || ||||| ||||| ||| || ||||| | ||| | ||||| ||| ||| | Sbjct 684688 ATGCCTTCCTTGTCCTGGATCTTGGCCTTGACGTTCTCGATGGTATCACTGGGCTCCACC 684629 Query 131188 TCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCATGACT 131238 || | ||| | ||||||||| || | || || ||||| ||||||||| || Sbjct 684628 TCCAAGGTGATGGTTTTACCAGTCAAGGTCTTCACGAAGATCTGCATGCCT 684578 Score = 122 bits (134), Expect = 8e-23 Identities = 166/232 (72%), Gaps = 0/232 (0%) Strand=Plus/Minus Query 131007 GCCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCT 131066 ||| || | || ||||| || | ||| | ||| |||||||| || |||||||| ||| Sbjct 684581 GCCTCCCCTCAGGCGCAGGACAAGATGCAGGGTGGACTCCTTCTGGATGTTGTAGTCGGA 684522 Query 131067 CATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGG 131126 || ||||||| ||| || ||||||||||| || | || | | |||||| || || || Sbjct 684521 CAGGGTGCGCCCGTCTTCCAGCTGCTTGCCAGCAAAAATCAGCCTCTGCTGATCGGGGGG 684462 Query 131127 GATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGAT 131186 ||| ||||| ||||| ||| || ||||| | ||| | || || ||| ||| | Sbjct 684461 GATGCCTTCCTTGTCCTGGATCTTGGCCTTGACGTTCTCGATGGTGTCACTGGGCTCCAC 684402 Query 131187 GTCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCATGACT 131238 || | ||| | ||||||||| || || || || || || ||||||||| || Sbjct 684401 CTCCAAGGTGATGGTTTTACCAGTCAGGGTCTTCACAAAGATCTGCATGCCT 684350 Score = 120 bits (132), Expect = 3e-22 Identities = 164/229 (72%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 131007 GCCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCT 131066 ||| || | || ||||| || | ||| | ||| |||||||| || |||||||| ||| Sbjct 684111 GCCTCCCCTCAGGCGCAGGACGAGATGCAGGGTGGACTCCTTCTGGATGTTGTAGTCGGA 684052 Query 131067 CATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGG 131126 || ||||||| || || ||||||||||| || | || | | |||||| || || || Sbjct 684051 CAGGGTGCGCCCATCTTCCAGCTGCTTGCCAGCAAAAATCAGCCTCTGCTGATCGGGGGG 683992 Query 131127 GATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGAT 131186 ||| ||||| ||||| ||| || ||||| | ||| | || ||| ||| ||| | Sbjct 683991 GATGCCTTCCTTGTCCTGGATCTTGGCCTTGACGTTCTCGATGGTGTCGCTGGGCTCCAC 683932 Query 131187 GTCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCATG 131235 || | ||| | ||| || ||||| || || || ||||| ||||||||| Sbjct 683931 CTCCAAGGTGATGGTCTTGCCGGTGAGGGTCTTCACGAAGATCTGCATG 683883 Score = 86.0 bits (94), Expect = 6e-12 Identities = 100/135 (74%), Gaps = 0/135 (0%) Strand=Plus/Minus Query 131007 GCCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCT 131066 ||| || | || |||||||| | || | ||| |||||||| || |||||||| ||| Sbjct 684353 GCCTCCCCTCAGGCGCAGCACCAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCGGA 684294 Query 131067 CATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGG 131126 || ||||||| || || ||||||||||| || | || | | |||||| || || || Sbjct 684293 CAGGGTGCGCCCATCTTCCAGCTGCTTGCCAGCAAAAATCAGCCTCTGCTGATCGGGGGG 684234 Query 131127 GATTCCTTCTTTGTC 131141 ||| ||||| ||||| Sbjct 684233 GATGCCTTCCTTGTC 684219 >seq1256 Length=67100 Score = 116 bits (128), Expect = 3e-21 Identities = 99/122 (81%), Gaps = 0/122 (0%) Strand=Plus/Plus Query 145676 ACGATCTCGGCGCACAAATTGCTACATTTGATGGTTCCCAGATTTTGCTGATTACTTTTC 145735 || ||||| | ||||| |||||| ||||||||||| ||||| || |||||||| || ||| Sbjct 29738 ACTATCTCTGTGCACAGATTGCTGCATTTGATGGTCCCCAGGTTCTGCTGATTGCTCTTC 29797 Query 145736 CTGTTGCACGCGTCCTTGTAGAGCATGTACGGTCCGCCAGTCTCCACCTGCGTCTCCACG 145795 |||||||| | ||| ||||| |||||||| || |||||||||| ||||| ||| | | Sbjct 29798 CTGTTGCAAGAGTCTTTGTACAGCATGTAAGGCGTGCCAGTCTCCGTCTGCGACTCGATG 29857 Query 145796 AT 145797 || Sbjct 29858 AT 29859 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 471810412711680