Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Callipepla_20squamata_20[genbank_20GCA_5F002218305.1_202017-07-13] 34,302 sequences; 1,045,281,893 total letters Query= NC_008603.1 Length=321240 Score E Sequences producing significant alignments: (Bits) Value seq693 95.1 2e-14 seq1178 93.3 9e-14 seq1850 89.7 1e-12 seq1788 89.7 1e-12 seq1787 89.7 1e-12 seq1227 89.7 1e-12 seq396 89.7 1e-12 seq271 89.7 1e-12 seq19 89.7 1e-12 seq4641 87.8 4e-12 seq29 87.8 4e-12 seq5621 86.0 1e-11 seq2477 86.0 1e-11 seq1455 86.0 1e-11 seq1425 86.0 1e-11 seq1329 86.0 1e-11 seq833 86.0 1e-11 seq72 86.0 1e-11 SEQ11837 84.2 4e-11 seq4876 84.2 4e-11 seq302 84.2 4e-11 >seq693 Length=427407 Score = 95.1 bits (104), Expect = 2e-14 Identities = 65/72 (90%), Gaps = 1/72 (1%) Strand=Plus/Minus Query 142053 GTCTCTGTGGCGCAATGGAC-AGCGCGTTGGACTTCTAATCCAAAGGTTGCGGGTTCGAC 142111 |||||||||||||||||||| |||||| ||||||||||||||| ||||| ||||||||| Sbjct 97163 GTCTCTGTGGCGCAATGGACGAGCGCGCTGGACTTCTAATCCAGAGGTTCCGGGTTCGAG 97104 Query 142112 CCCCGCCAGAGA 142123 |||| |||||| Sbjct 97103 TCCCGGCAGAGA 97092 >seq1178 Length=99940 Score = 93.3 bits (102), Expect = 9e-14 Identities = 66/76 (87%), Gaps = 0/76 (0%) Strand=Plus/Plus Query 142500 GATAGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTC 142559 || ||||||| |||||||||||||||||| ||||||||||||| |||||||||||| Sbjct 45562 GAGAGCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTC 45621 Query 142560 GAGCCCCACATCGGGC 142575 ||||||||| | |||| Sbjct 45622 GAGCCCCACGTTGGGC 45637 Score = 91.5 bits (100), Expect = 3e-13 Identities = 64/73 (88%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 ||||||| |||||||||||||||||| ||||||||||||| ||||||||||||||| Sbjct 23833 AGCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAG 23892 Query 142563 CCCCACATCGGGC 142575 |||||| | |||| Sbjct 23893 CCCCACGTTGGGC 23905 Score = 91.5 bits (100), Expect = 3e-13 Identities = 64/73 (88%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 ||||||| |||||||||||||||||| ||||||||||||| ||||||||||||||| Sbjct 42603 AGCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAG 42662 Query 142563 CCCCACATCGGGC 142575 |||||| | |||| Sbjct 42663 CCCCACGTTGGGC 42675 Score = 91.5 bits (100), Expect = 3e-13 Identities = 64/73 (88%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 ||||||| |||||||||||||||||| ||||||||||||| ||||||||||||||| Sbjct 46660 AGCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAG 46719 Query 142563 CCCCACATCGGGC 142575 |||||| | |||| Sbjct 46720 CCCCACGTTGGGC 46732 >seq1850 Length=16339 Score = 89.7 bits (98), Expect = 1e-12 Identities = 63/72 (88%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563 |||| | |||||||||||||||||| ||||||||||||| |||||||||||||||| Sbjct 2798 GCCCAGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAGC 2857 Query 142564 CCCACATCGGGC 142575 ||||||| |||| Sbjct 2858 CCCACATTGGGC 2869 >seq1788 Length=17426 Score = 89.7 bits (98), Expect = 1e-12 Identities = 63/72 (88%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563 |||||| |||||||||||||||||| ||||||||||||| |||||||||||||||| Sbjct 8831 GCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAGC 8890 Query 142564 CCCACATCGGGC 142575 ||||| | |||| Sbjct 8891 CCCACGTTGGGC 8902 >seq1787 Length=17446 Score = 89.7 bits (98), Expect = 1e-12 Identities = 63/72 (88%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563 |||||| |||||||||||||||||| ||||||||||||| ||||||||||||||| Sbjct 527 GCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGAGTCGTGGGTTCGAGC 586 Query 142564 CCCACATCGGGC 142575 ||||||| |||| Sbjct 587 CCCACATTGGGC 598 >seq1227 Length=80129 Score = 89.7 bits (98), Expect = 1e-12 Identities = 63/72 (88%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563 |||||| |||||||||||||||||| ||||||||||||| |||||||||||||||| Sbjct 62967 GCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAGC 62908 Query 142564 CCCACATCGGGC 142575 ||||| | |||| Sbjct 62907 CCCACGTTGGGC 62896 >seq396 Length=818593 Score = 89.7 bits (98), Expect = 1e-12 Identities = 63/72 (88%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563 |||||| |||||||||||||||||| ||||||||||||| |||||||||||||||| Sbjct 168053 GCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAGC 167994 Query 142564 CCCACATCGGGC 142575 ||||| | |||| Sbjct 167993 CCCACGTTGGGC 167982 >seq271 Length=1061280 Score = 89.7 bits (98), Expect = 1e-12 Identities = 63/72 (88%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563 |||||| |||||||||||||||||| ||||||||||||| |||||||||||||||| Sbjct 858475 GCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAGC 858416 Query 142564 CCCACATCGGGC 142575 ||||| | |||| Sbjct 858415 CCCACGTTGGGC 858404 >seq19 Length=3254205 Score = 89.7 bits (98), Expect = 1e-12 Identities = 63/72 (88%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563 |||||| |||||||||||||||||| ||||||||||||| |||||||||||||||| Sbjct 336262 GCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAGC 336203 Query 142564 CCCACATCGGGC 142575 ||||| | |||| Sbjct 336202 CCCACGTTGGGC 336191 >seq4641 Length=7051 Score = 87.8 bits (96), Expect = 4e-12 Identities = 63/73 (86%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563 |||||| |||||||||||||||||| ||||||||||| | |||||||||||||||| Sbjct 6314 GCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATGTCAGGGTCGTGGGTTCGAGC 6373 Query 142564 CCCACATCGGGCA 142576 ||||| | ||||| Sbjct 6374 CCCACGTTGGGCA 6386 >seq29 Length=3003393 Score = 87.8 bits (96), Expect = 4e-12 Identities = 63/73 (86%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563 || ||| |||||||||||||||||| ||||||||||||| |||||||||||||||| Sbjct 2648948 GCGCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAGC 2649007 Query 142564 CCCACATCGGGCA 142576 ||||| | ||||| Sbjct 2649008 CCCACGTTGGGCA 2649020 >seq5621 Length=5885 Score = 86.0 bits (94), Expect = 1e-11 Identities = 62/72 (86%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563 |||||| ||||||||||||||||||| ||||||||||| |||| ||||||||||| Sbjct 3053 GCCCGGCTAGCTCAGTCGGTAGAGCGTGGGACTCTTAATCCCAGGGTCATGGGTTCGAGC 2994 Query 142564 CCCACATCGGGC 142575 ||||||| |||| Sbjct 2993 CCCACATTGGGC 2982 >seq2477 Length=11436 Score = 86.0 bits (94), Expect = 1e-11 Identities = 62/72 (86%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563 |||||| ||||||||||| |||||| ||||||||||||| |||||||||||||||| Sbjct 6982 GCCCGGCTAGCTCAGTCGATAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAGC 7041 Query 142564 CCCACATCGGGC 142575 ||||| | |||| Sbjct 7042 CCCACGTTGGGC 7053 >seq1455 Length=30489 Score = 86.0 bits (94), Expect = 1e-11 Identities = 62/72 (86%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563 |||||| |||||||||||||||||| |||||||||||| |||||||||||||||| Sbjct 311 GCCCGGCTAGCTCAGTCGGTAGAGCATGGGACTCTTAATCTCAGGGTCGTGGGTTCGAGC 252 Query 142564 CCCACATCGGGC 142575 ||||| | |||| Sbjct 251 CCCACGTTGGGC 240 >seq1425 Length=32839 Score = 86.0 bits (94), Expect = 1e-11 Identities = 62/72 (86%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563 |||||| |||||||||||||||||| ||||||||||||| |||||||| ||||||| Sbjct 29340 GCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGATTCGAGC 29399 Query 142564 CCCACATCGGGC 142575 ||||| | |||| Sbjct 29400 CCCACGTTGGGC 29411 >seq1329 Length=48347 Score = 86.0 bits (94), Expect = 1e-11 Identities = 62/72 (86%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563 |||||| |||||||||||||||||| ||||||||||||| |||||||||||| ||| Sbjct 6438 GCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCAAGC 6497 Query 142564 CCCACATCGGGC 142575 ||||| | |||| Sbjct 6498 CCCACGTTGGGC 6509 >seq833 Length=306591 Score = 86.0 bits (94), Expect = 1e-11 Identities = 62/72 (86%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563 |||||| |||||||||||||||||| ||||||||||||| |||||||||||||||| Sbjct 225598 GCCCGGCTAGCTCAGTCGGTAGAGCATAAGACTCTTAATCTCAGGGTCGTGGGTTCGAGC 225539 Query 142564 CCCACATCGGGC 142575 |||| | |||| Sbjct 225538 CCCATGTTGGGC 225527 >seq72 Length=2193380 Score = 86.0 bits (94), Expect = 1e-11 Identities = 62/72 (86%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563 |||||||||||||||||| |||||| ||||||||||||| |||||||||||||||| Sbjct 294449 GCCCGGTTAGCTCAGTCGATAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAGC 294508 Query 142564 CCCACATCGGGC 142575 |||| | |||| Sbjct 294509 CCCAAGTTGGGC 294520 >SEQ11837 Length=2330 Score = 84.2 bits (92), Expect = 4e-11 Identities = 61/71 (86%), Gaps = 0/71 (0%) Strand=Plus/Plus Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563 |||||| |||||||||||||||||| ||||||||||||| ||| |||||||||||| Sbjct 1726 GCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTTGTGGGTTCGAGC 1785 Query 142564 CCCACATCGGG 142574 ||||| | ||| Sbjct 1786 CCCACGTTGGG 1796 >seq4876 Length=6791 Score = 84.2 bits (92), Expect = 4e-11 Identities = 61/71 (86%), Gaps = 0/71 (0%) Strand=Plus/Plus Query 142505 CCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGCC 142564 ||||| ||||||||||| |||||| ||||||||||||| ||||||||||||||||| Sbjct 5756 CCCGGCTAGCTCAGTCGATAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAGCC 5815 Query 142565 CCACATCGGGC 142575 |||| | |||| Sbjct 5816 CCACGTTGGGC 5826 >seq302 Length=997260 Score = 84.2 bits (92), Expect = 4e-11 Identities = 66/79 (84%), Gaps = 0/79 (0%) Strand=Plus/Plus Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563 |||| | |||||||||| ||||||| | ||||||||||||| |||||||||||| ||| Sbjct 769698 GCCCAGCTAGCTCAGTCAGTAGAGCACGAGACTCTTAATCTCAGGGTCGTGGGTTCTAGC 769757 Query 142564 CCCACATCGGGCAGAAGTC 142582 ||||| | |||| ||||| Sbjct 769758 CCCACGTTGGGCTCAAGTC 769776 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1027385071507982