Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Callipepla_20squamata_20[genbank_20GCA_5F002218305.1_202017-07-13] 34,302 sequences; 1,045,281,893 total letters Query= NC_009011.2 Length=131331 Score E Sequences producing significant alignments: (Bits) Value seq384 114 1e-20 >seq384 Length=852418 Score = 114 bits (126), Expect = 1e-20 Identities = 146/201 (73%), Gaps = 0/201 (0%) Strand=Plus/Plus Query 114186 GTAGATTCTTTTTGAATGTTGTAATCGCTCATAGTACGAGAATCTTCAAGTTGTTTACCA 114245 || || || || || |||||||| ||| || || || |||||| || || || ||| Sbjct 86252 GTGGACTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGCCCATCTTCCAGCTGCTTGCCA 86311 Query 114246 GCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGCAATCTTTTGTTTT 114305 ||| |||| || | ||| || || |||||||||||||||||||| ||||| ||| Sbjct 86312 GCGAAGATCAGCCTCTGCTGATCGGGAGGAATGCCTTCTTTGTCTTGGATCTTGGCCTTT 86371 Query 114306 AGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTTGCCGGTCAGAGTT 114365 | | ||||| |||||| ||| ||||| || | || | || ||||| ||||| || Sbjct 86372 ACGTTTTCAATGGTGTCACTGGGCTCGACCTCGAGCGTGATGGTCTTGCCAGTCAGGGTC 86431 Query 114366 TTTACAAAAATCTGCATGGCT 114386 || ||||| ||||||||| || Sbjct 86432 TTCACAAAGATCTGCATGCCT 86452 Score = 105 bits (116), Expect = 6e-18 Identities = 144/201 (72%), Gaps = 0/201 (0%) Strand=Plus/Plus Query 114186 GTAGATTCTTTTTGAATGTTGTAATCGCTCATAGTACGAGAATCTTCAAGTTGTTTACCA 114245 || || || || || |||||||| || || || || |||||| || || |||||| Sbjct 85796 GTGGACTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGCCCATCTTCCAGCTGCTTACCA 85855 Query 114246 GCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGCAATCTTTTGTTTT 114305 ||| |||| || | ||| || || |||||||||||||||||||| ||||| || Sbjct 85856 GCGAAGATCAGCCTCTGCTGATCGGGAGGAATGCCTTCTTTGTCTTGGATCTTGGCCTTC 85915 Query 114306 AGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTTGCCGGTCAGAGTT 114365 | | ||||| |||||| ||| || || || | ||| | || ||||| ||||| || Sbjct 85916 ACGTTTTCAATGGTGTCACTGGGCTCAACTTCAAGGGTGATGGTCTTGCCAGTCAGGGTC 85975 Query 114366 TTTACAAAAATCTGCATGGCT 114386 || || || ||||||||| || Sbjct 85976 TTCACGAAGATCTGCATGCCT 85996 Score = 105 bits (116), Expect = 6e-18 Identities = 142/198 (72%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 114186 GTAGATTCTTTTTGAATGTTGTAATCGCTCATAGTACGAGAATCTTCAAGTTGTTTACCA 114245 || |||||||| || |||||||| || || || || ||||| || || |||||| Sbjct 86480 GTGGATTCTTTCTGGATGTTGTAGTCAGACAGGGTGCGCCCGTCTTCCAGCTGCTTACCA 86539 Query 114246 GCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGCAATCTTTTGTTTT 114305 ||| |||| || | ||| || || |||||||||||||||||||| ||||| || Sbjct 86540 GCGAAGATCAGCCTCTGCTGATCGGGAGGAATGCCTTCTTTGTCTTGGATCTTGGCCTTC 86599 Query 114306 AGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTTGCCGGTCAGAGTT 114365 | | || | ||||||| | | ||||| || | || | || ||||| ||||| || Sbjct 86600 ACATTCTCTATGGTGTCGCTAGGCTCGACCTCAAGAGTGATGGTCTTGCCAGTCAGGGTC 86659 Query 114366 TTTACAAAAATCTGCATG 114383 || ||||| ||||||||| Sbjct 86660 TTCACAAAGATCTGCATG 86677 Score = 100 bits (110), Expect = 2e-16 Identities = 141/198 (71%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 114186 GTAGATTCTTTTTGAATGTTGTAATCGCTCATAGTACGAGAATCTTCAAGTTGTTTACCA 114245 || |||||||| || |||||||| ||| || || || ||||| || || |||||| Sbjct 86024 GTGGATTCTTTCTGGATGTTGTAGTCGGACAGGGTGCGCCCGTCTTCCAGCTGCTTACCA 86083 Query 114246 GCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGCAATCTTTTGTTTT 114305 || |||| || | ||| || || |||||||||||||||||||| ||||| || Sbjct 86084 GCAAAGATCAGCCTCTGCTGATCGGGAGGAATGCCTTCTTTGTCTTGGATCTTGGCCTTC 86143 Query 114306 AGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTTGCCGGTCAGAGTT 114365 | | || | |||||| ||| ||||| || | || | || ||||| |||| ||| Sbjct 86144 ACATTCTCTATGGTGTCACTGGGCTCGACCTCAAGAGTGATTGTCTTGCCAGTCAAGGTT 86203 Query 114366 TTTACAAAAATCTGCATG 114383 || || || ||||||||| Sbjct 86204 TTCACGAAGATCTGCATG 86221 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 419958760450824