Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Callipepla_20squamata_20[genbank_20GCA_5F002218305.1_202017-07-13] 34,302 sequences; 1,045,281,893 total letters Query= NC_009127.1 Length=295146 Score E Sequences producing significant alignments: (Bits) Value seq1256 114 2e-20 seq184 96.9 7e-15 seq518 84.2 4e-11 >seq1256 Length=67100 Score = 114 bits (126), Expect = 2e-20 Identities = 159/219 (73%), Gaps = 3/219 (1%) Strand=Plus/Plus Query 244321 CCCCT-TGCTGACGGGGCTGCCCTCGTAGGTCGGGTAGGGACCGTCGCGCTGGGCCAGCT 244379 ||||| ||||||| || |||||||| || || || || || ||| || |||| Sbjct 28225 CCCCTCTGCTGACAGGAGAACCCTCGTACGTTTCATACGGTCCTTCCTGCTCAGCAAGCT 28284 Query 244380 TACAGCTCTCGTCGAGGGCGGCGTAGTAGATGGTCTCGAAGATCATCTTGTTCATGTCGC 244439 |||||| | || | || |||| ||||||||||| || ||| || ||||| | Sbjct 28285 CACAGCTAGCTTCCAAAGCACCGTAATAGATGGTCTCAAATATCTGCTGGTTCAGGAGCT 28344 Query 244440 GGGCCTTGCCGCAGGTGAAGGGGATGCC-CATCATCATGAAGACGTCGGCCAGTCCCTGC 244498 |||||| | || ||| ||||| || ||| | |||||| |||| ||||| |||||| Sbjct 28345 GGGCCTCGGGGCTTTCGAA-GGGATACCTCATGAGGATGAAGGCGTCAGCCAGGCCCTGC 28403 Query 244499 ACGCCGATGCCGATGGGTCTGTGTCGCTTGTTGGAGCGC 244537 ||||||||||||||||| | ||| || ||||||||||| Sbjct 28404 ACGCCGATGCCGATGGGGCGGTGCCGTCTGTTGGAGCGC 28442 Score = 96.9 bits (106), Expect = 7e-15 Identities = 112/151 (74%), Gaps = 0/151 (0%) Strand=Plus/Plus Query 245003 ACCCTCTGCATGAAGAGGTCGGGGATCCAGAGGGCCTGGAAGAGGTCCCTGGTCCTCTGC 245062 || |||| ||| ||||| || || |||||||| || ||| ||||| |||| | |||| Sbjct 31004 ACTCTCTTCATAAAGAGATCAGGAATCCAGAGAGCAAAGAAAAGGTCTCTGGCACGCTGC 31063 Query 245063 TCGTCCGAGCCAGTGTTCTTCCTCAGCTCCAAAAAGTCAAAGACGTCGACGTGCCAGGGC 245122 || ||| |||||||||||| | | |||| ||| || |||| ||| | |||||| ||| Sbjct 31064 TCCTCCTTCCCAGTGTTCTTCTTTAAGTCCAGAAACTCGAAGATGTCCAGGTGCCACGGC 31123 Query 245123 TCCATGTAGACAGCGAGGGCGCCGGGCCGCT 245153 |||| ||||| || | || || |||| || Sbjct 31124 TCCAGGTAGATGGCAAAAGCCCCAGGCCTCT 31154 Score = 91.5 bits (100), Expect = 3e-13 Identities = 104/140 (74%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 244097 ACCTGAAACTCTCCCGACAGCACGCGGCGCTGGTAGAGGTTGCTGCTGAGCGGCTCGATG 244156 ||||||||||||||||| || || | ||| ||||| ||| ||| || ||||||||| Sbjct 27012 ACCTGAAACTCTCCCGAAAGGACTCTGCGTGTGTAGATGTTACTGGTGTAGGGCTCGATG 27071 Query 244157 CTCTCCGTGTTGCCCAGTATCTGCGCCGTGCTCGCAGTCGGCATGGGCGACACCAGCAGA 244216 || |||||||||| ||||| || ||| ||||| |||||||| || | || || Sbjct 27072 GATTCGTTGTTGCCCAGGATCTGAGCAGTGGAAGCAGTTGGCATGGGGGAAAGGAGAAGG 27131 Query 244217 CTGTTCCTCACGCCGTGCCT 244236 ||||| || || || | ||| Sbjct 27132 CTGTTTCTGACACCATACCT 27151 >seq184 Length=1437213 Score = 96.9 bits (106), Expect = 7e-15 Identities = 99/127 (78%), Gaps = 2/127 (2%) Strand=Plus/Plus Query 42706 TGGTAGCCTTTACCGCCGTCGAGGGCATCTTCTTCTCGGGCGCCTTCGCCTCCATCTTCT 42765 ||||||| ||| | || || || ||||||||||| || ||| | || || || || |||| Sbjct 73884 TGGTAGCATTTGCAGCAGTGGAAGGCATCTTCTTTTCTGGCTCTTTTGCATCAATTTTCT 73943 Query 42766 GGCTCAAGCAGA-AGGTGTCGATGCCCGGACTCACCTTCTCGAACGAACTCATCAGCAGG 42824 |||| ||| | | |||| | ||||| |||||||| ||||| || ||||||||||| || Sbjct 73944 GGCTGAAGAAAAGAGGT-TTAATGCCTGGACTCACTTTCTCTAATGAACTCATCAGTAGA 74002 Query 42825 GACGAGG 42831 || |||| Sbjct 74003 GATGAGG 74009 >seq518 Length=643042 Score = 84.2 bits (92), Expect = 4e-11 Identities = 100/136 (74%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 42696 GGCGAGAGGCTGGTAGCCTTTACCGCCGTCGAGGGCATCTTCTTCTCGGGCGCCTTCGCC 42755 || ||||| |||| |||||| | || || || ||||||||||| ||||| | || || Sbjct 337221 GGTGAGAGAGTGGTCGCCTTTGCTGCAGTTGAAGGCATCTTCTTTTCGGGTTCATTTGCT 337162 Query 42756 TCCATCTTCTGGCTCAAGCAGAAGGTGTCGATGCCCGGACTCACCTTCTCGAACGAACTC 42815 | || || ||||| ||| ||| || |||||| ||| | || ||||| || ||||| Sbjct 337161 GCTATATTTTGGCTGAAGAAGAGGGGCCTGATGCCTGGATTGACTTTCTCCAATGAACTT 337102 Query 42816 ATCAGCAGGGACGAGG 42831 || ||||| || |||| Sbjct 337101 ATTAGCAGAGATGAGG 337086 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 943934290959520