Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Callipepla_20squamata_20[genbank_20GCA_5F002218305.1_202017-07-13] 34,302 sequences; 1,045,281,893 total letters Query= NC_009333.1 Length=137969 Score E Sequences producing significant alignments: (Bits) Value seq470 95.1 1e-14 >seq470 Length=704619 Score = 95.1 bits (104), Expect = 1e-14 Identities = 121/164 (74%), Gaps = 2/164 (1%) Strand=Plus/Plus Query 20237 AGACCAGTAACATGAGCAAGCATATAAGTTAAGAGGGAATAGCTGGCAATGTTAAAAGGA 20296 || || || ||||| |||| ||| || || | || |||||||||||||| || ||||| Sbjct 26753 AGCCCTGTGACATGGGCAATCATGTATGTGAGCAGCGAATAGCTGGCAATATTGAAAGGC 26812 Query 20297 ACTCCCAAACCCATGTCTCCCGACCTCTGATACAGCTGACAGGAAAGCTCACC-GTCAGC 20355 ||||| | ||||| ||||| |||||||| ||||| || || || || ||||| |||| Sbjct 26813 ACTCCTAGTCCCATATCTCCAGACCTCTGGTACAGTTGGCAAGACAGTTCACCATTCAG- 26871 Query 20356 TACATAAAATTGACATAACAAGTGACAGGGCGGAAGCGCCATCA 20399 ||||| || || || | || || ||||| | ||||||| Sbjct 26872 AACATAGAACTGGCAGAGAGCATGGCAAGGCGGCAAAGCCATCA 26915 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 441183550377680