Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Callipepla_20squamata_20[genbank_20GCA_5F002218305.1_202017-07-13] 34,302 sequences; 1,045,281,893 total letters Query= NC_009603.1 Length=46365 Score E Sequences producing significant alignments: (Bits) Value SEQ12390 291 2e-74 >SEQ12390 Length=2195 Score = 291 bits (322), Expect = 2e-74 Identities = 304/398 (76%), Gaps = 6/398 (2%) Strand=Plus/Plus Query 42788 GTGTCGGGGTCGTCGGCCGCGCCGAAGCGCAGGGCGTCCATGACCGCGACCGGGCGAGCG 42847 |||||| | |||| |||| ||||||||||| ||||||||| || || || || ||| Sbjct 23 GTGTCGTCGGCGTCCGCCGGTCCGAAGCGCAGCTGGTCCATGACAGCCACGGGCCGCGCG 82 Query 42848 CCCATGGAGATGATGTCGCGGACGATGCCGCCCACACCCGTCGCCGCGCCCTGGAAGGGC 42907 ||||| | ||||||||||| || || ||||| || || ||||| ||||||||| | ||| Sbjct 83 CCCATCGCCATGATGTCGCGAACAATCCCGCCGACGCCGGTCGCGGCGCCCTGGTACGGC 142 Query 42908 TCGATGAACGAGGGGTGGTTGTGACTCTCCGCCTTGAACGTGACCGCCCATCCCTCGCCG 42967 |||||| |||||||||||||||| |||| ||||||| || || ||||| || |||||| Sbjct 143 TCGATGTACGAGGGGTGGTTGTGCGACTCCACCTTGAAGGTCACGGCCCAGCCGTCGCCG 202 Query 42968 ACGTCGATGACGCCCGCGTTCTGCCCCAT---CCCGACCATGAGGCGCTCGCGCATCTCG 43024 | ||| | ||||| ||||||| || || | ||| |||| | | ||||| || Sbjct 203 ATGTCCACCACGCCGGCGTTCTCACCGATGCCCGCGAGCATGGTGGAC---CGCATGTCT 259 Query 43025 TCCGAGACCTTCTGCCCGAACCTCTTGAGGTAGAGCTTGCTCGACTTGTAGGAGCAGTGC 43084 || | | ||| |||||| ||| |||| | |||| |||||||||||||||||| Sbjct 260 TCGGTGGTGGTCTCCCCGAAGTACTTCAGGTGCACCTTGGAGGACTTGTAGGAGCAGTGC 319 Query 43085 TCCGACCACATCACCGAGTACATCGCCAGCTCGCCCGAGGTGGGGCGGCGGCCGAGGATC 43144 ||||||||||| ||||||||||| ||||||||| | ||||||||||| || |||||| Sbjct 320 TCCGACCACATGACCGAGTACATGGCCAGCTCGGCGTCCGTGGGGCGGCGCCCCAGGATC 379 Query 43145 TCCTTGATCCTCGCGTACTCGTCGTCCTTGAGGCCCAG 43182 || ||| | |||||||| || |||||||| || || Sbjct 380 TCGCGGATGCGGGCGTACTCATCCTCCTTGAGTCCGAG 417 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 148186013867348