Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Callipepla_20squamata_20[genbank_20GCA_5F002218305.1_202017-07-13] 34,302 sequences; 1,045,281,893 total letters Query= NC_010240.1 Length=169794 Score E Sequences producing significant alignments: (Bits) Value seq448 122 9e-23 seq384 122 9e-23 seq285 96.9 4e-15 seq102 91.5 2e-13 seq579 89.7 6e-13 seq367 86.0 7e-12 >seq448 Length=747048 Score = 122 bits (134), Expect = 9e-23 Identities = 163/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 41982 CCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCC 42041 ||||| || | |||| || | ||||| ||| |||||| || || ||||| || | | Sbjct 684580 CCTCCCCTCAGGCGCAGGACAAGATGCAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAC 684521 Query 42042 AGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGC 42101 || || ||| |||| || |||||||| ||||| || || || | |||||| |||| || Sbjct 684520 AGGGTGCGCCCGTCTTCCAGCTGCTTGCCAGCAAAAATCAGCCTCTGCTGATCGGGGGGG 684461 Query 42102 ACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCACA 42161 | || ||||||||| ||| || |||| || | | ||||| || | ||||| Sbjct 684460 ATGCCTTCCTTGTCCTGGATCTTGGCCTTGACGTTCTCGATGGTGTCACTGGGCTCCACC 684401 Query 42162 TCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 42208 || | ||||||||||| || || || ||||| |||||||| ||||| Sbjct 684400 TCCAAGGTGATGGTTTTACCAGTCAGGGTCTTCACAAAGATCTGCAT 684354 Score = 105 bits (116), Expect = 7e-18 Identities = 160/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 41981 ACCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGC 42040 ||| || || | |||| ||||| |||| ||| |||||| || || ||||| || | Sbjct 684809 ACCACCCCTCAGGCGCAGCACCAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCGGA 684750 Query 42041 CAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGG 42100 ||| || ||| | || || |||||||| ||||| || || || | |||||| |||| || Sbjct 684749 CAGGGTGCGCCCATCTTCCAGCTGCTTGCCAGCAAAAATCAGCCTCTGCTGATCGGGGGG 684690 Query 42101 CACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCAC 42160 | || ||||||||| ||| || |||| || | | || || || | ||||| Sbjct 684689 GATGCCTTCCTTGTCCTGGATCTTGGCCTTGACGTTCTCGATGGTATCACTGGGCTCCAC 684630 Query 42161 ATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 42208 || | ||||||||||| || || | ||||| || ||||| ||||| Sbjct 684629 CTCCAAGGTGATGGTTTTACCAGTCAAGGTCTTCACGAAGATCTGCAT 684582 Score = 89.7 bits (98), Expect = 6e-13 Identities = 63/72 (88%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 57007 CTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 57066 |||| || | | |||||||||| ||||||||||||||||||||| ||||||||||||| Sbjct 681986 CTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACTA 681927 Query 57067 TACTACCGAGGA 57078 ||||| |||||| Sbjct 681926 TACTAACGAGGA 681915 Score = 89.7 bits (98), Expect = 6e-13 Identities = 63/72 (88%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 57007 CTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 57066 |||| || | | |||||||||| ||||||||||||||||||||| ||||||||||||| Sbjct 682620 CTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACTA 682561 Query 57067 TACTACCGAGGA 57078 ||||| |||||| Sbjct 682560 TACTAACGAGGA 682549 >seq384 Length=852418 Score = 122 bits (134), Expect = 9e-23 Identities = 165/230 (72%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 41982 CCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCC 42041 ||||| || | ||||| ||||| |||| ||| || || || || ||||| |||| | Sbjct 86450 CCTCCCCTCAGACGCAGCACCAGGTGCAGGGTGGATTCTTTCTGGATGTTGTAGTCAGAC 86509 Query 42042 AGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGC 42101 || || ||| |||| || ||||||||||||||||| || || | |||||| |||| || Sbjct 86510 AGGGTGCGCCCGTCTTCCAGCTGCTTACCAGCGAAGATCAGCCTCTGCTGATCGGGAGGA 86569 Query 42102 ACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCACA 42161 | || || ||||| ||| || || | || | | |||||||| | || || Sbjct 86570 ATGCCTTCTTTGTCTTGGATCTTGGCCTTCACATTCTCTATGGTGTCGCTAGGCTCGACC 86629 Query 42162 TCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCATTTT 42211 || | |||||||| ||||| || || ||||| |||||||| ||||| || Sbjct 86630 TCAAGAGTGATGGTCTTGCCAGTCAGGGTCTTCACAAAGATCTGCATGTT 86679 Score = 116 bits (128), Expect = 4e-21 Identities = 162/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 41982 CCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCC 42041 |||||||| | ||||| ||||| |||| ||| |||||| || || ||||| |||| | Sbjct 85766 CCTCCTCTCAGACGCAGCACCAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCAGAC 85825 Query 42042 AGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGC 42101 || || ||| | || || ||||||||||||||||| || || | |||||| |||| || Sbjct 85826 AGGGTGCGCCCATCTTCCAGCTGCTTACCAGCGAAGATCAGCCTCTGCTGATCGGGAGGA 85885 Query 42102 ACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCACA 42161 | || || ||||| ||| || || | | | | ||||| || | || || Sbjct 85886 ATGCCTTCTTTGTCTTGGATCTTGGCCTTCACGTTTTCAATGGTGTCACTGGGCTCAACT 85945 Query 42162 TCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 42208 || | |||||||| ||||| || || ||||| || ||||| ||||| Sbjct 85946 TCAAGGGTGATGGTCTTGCCAGTCAGGGTCTTCACGAAGATCTGCAT 85992 Score = 89.7 bits (98), Expect = 6e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 41982 CCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCC 42041 ||||| || | ||||| ||||| |||| ||| || || || || ||||| || | | Sbjct 85994 CCTCCCCTCAGACGCAGCACCAGGTGCAGGGTGGATTCTTTCTGGATGTTGTAGTCGGAC 86053 Query 42042 AGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGC 42101 || || ||| |||| || |||||||||||||| || || || | |||||| |||| || Sbjct 86054 AGGGTGCGCCCGTCTTCCAGCTGCTTACCAGCAAAGATCAGCCTCTGCTGATCGGGAGGA 86113 Query 42102 ACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCACA 42161 | || || ||||| ||| || || | || | | ||||| || | || || Sbjct 86114 ATGCCTTCTTTGTCTTGGATCTTGGCCTTCACATTCTCTATGGTGTCACTGGGCTCGACC 86173 Query 42162 TCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 42208 || | ||||| || ||||| || | || || || ||||| ||||| Sbjct 86174 TCAAGAGTGATTGTCTTGCCAGTCAAGGTTTTCACGAAGATCTGCAT 86220 >seq285 Length=1023757 Score = 96.9 bits (106), Expect = 4e-15 Identities = 68/78 (87%), Gaps = 0/78 (0%) Strand=Plus/Minus Query 57005 TTCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCAC 57064 |||||| || | | |||||||||| ||||||||||||||||||||| ||||||||||| Sbjct 962516 TTCTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCAC 962457 Query 57065 TATACTACCGAGGATTGA 57082 ||||||| |||||| ||| Sbjct 962456 TATACTAACGAGGAGTGA 962439 >seq102 Length=1910416 Score = 91.5 bits (100), Expect = 2e-13 Identities = 65/75 (87%), Gaps = 0/75 (0%) Strand=Plus/Minus Query 57007 CTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 57066 |||| || | | |||||||||| ||||||||||||||||||||| ||||||||||||| Sbjct 1420694 CTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACTA 1420635 Query 57067 TACTACCGAGGATTG 57081 ||||| |||||| || Sbjct 1420634 TACTAACGAGGAGTG 1420620 Score = 91.5 bits (100), Expect = 2e-13 Identities = 65/75 (87%), Gaps = 0/75 (0%) Strand=Plus/Minus Query 57007 CTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 57066 |||| || | | |||||||||| ||||||||||||||||||||| ||||||||||||| Sbjct 1421940 CTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACTA 1421881 Query 57067 TACTACCGAGGATTG 57081 ||||| |||||| || Sbjct 1421880 TACTAACGAGGAGTG 1421866 Score = 89.7 bits (98), Expect = 6e-13 Identities = 63/72 (88%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 57007 CTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 57066 |||| || | | |||||||||| ||||||||||||||||||||| ||||||||||||| Sbjct 1422049 CTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACTA 1422108 Query 57067 TACTACCGAGGA 57078 ||||| |||||| Sbjct 1422109 TACTAACGAGGA 1422120 >seq579 Length=559461 Score = 89.7 bits (98), Expect = 6e-13 Identities = 63/72 (88%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 57007 CTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 57066 |||| || | | |||||||||| ||||||||||||||||||||| ||||||||||||| Sbjct 290870 CTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACTA 290929 Query 57067 TACTACCGAGGA 57078 ||||| |||||| Sbjct 290930 TACTAACGAGGA 290941 Score = 89.7 bits (98), Expect = 6e-13 Identities = 63/72 (88%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 57007 CTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 57066 |||| || | | |||||||||| ||||||||||||||||||||| ||||||||||||| Sbjct 291212 CTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACTA 291153 Query 57067 TACTACCGAGGA 57078 ||||| |||||| Sbjct 291152 TACTAACGAGGA 291141 Score = 89.7 bits (98), Expect = 6e-13 Identities = 63/72 (88%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 57007 CTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 57066 |||| || | | |||||||||| ||||||||||||||||||||| ||||||||||||| Sbjct 291818 CTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACTA 291759 Query 57067 TACTACCGAGGA 57078 ||||| |||||| Sbjct 291758 TACTAACGAGGA 291747 >seq367 Length=885094 Score = 86.0 bits (94), Expect = 7e-12 Identities = 62/72 (86%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 57007 CTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 57066 |||| || | | |||||||||| ||||||||||||||||||||| ||||| ||||||| Sbjct 373787 CTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTTACCACTA 373846 Query 57067 TACTACCGAGGA 57078 ||||| |||||| Sbjct 373847 TACTAACGAGGA 373858 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 542979883931680