Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Callipepla_20squamata_20[genbank_20GCA_5F002218305.1_202017-07-13] 34,302 sequences; 1,045,281,893 total letters Query= NC_011423.1 Length=111724 Score E Sequences producing significant alignments: (Bits) Value seq448 89.7 4e-13 >seq448 Length=747048 Score = 89.7 bits (98), Expect = 4e-13 Identities = 142/204 (70%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 14973 ATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCGCGTCTTCTAATTG 15032 ||| ||||| || || || || |||||||| ||| || | | | ||||||| | || Sbjct 684557 ATGCAGGGTGGACTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGCCCGTCTTCCAGCTG 684498 Query 15033 TTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACAAATTTT 15092 |||||||| | |||| | ||| || ||| || || ||||||||||| || || Sbjct 684497 CTTGCCAGCAAAAATCAGCCTCTGCTGATCGGGGGGGATGCCTTCCTTGTCCTGGATCTT 684438 Query 15093 GCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTTACCTGT 15152 | || || | || || || || || || || || ||||| ||||||||||| || Sbjct 684437 GGCCTTGACGTTCTCGATGGTGTCACTGGGCTCCACCTCCAAGGTGATGGTTTTACCAGT 684378 Query 15153 CAGAGTTTTTACAAAAATTTGCAT 15176 ||| || || ||||| || ||||| Sbjct 684377 CAGGGTCTTCACAAAGATCTGCAT 684354 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 357242590264070