Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Callipepla_20squamata_20[genbank_20GCA_5F002218305.1_202017-07-13] 34,302 sequences; 1,045,281,893 total letters Query= NC_012639.1 Length=141291 Score E Sequences producing significant alignments: (Bits) Value seq384 86.0 6e-12 seq1256 84.2 2e-11 >seq384 Length=852418 Score = 86.0 bits (94), Expect = 6e-12 Identities = 157/230 (68%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCG 45170 || ||||| | || | || ||| || ||||| || ||||| || ||||| || || || Sbjct 86447 ATGCCTCCCCTCAGACGCAGCACCAGGTGCAGGGTGGATTCTTTCTGGATGTTGTAGTCA 86506 Query 45171 CTGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGC 45230 | ||| || |||| || || || ||| | |||| | ||||| || || Sbjct 86507 GACAGGGTGCGCCCGTCTTCCAGCTGCTTACCAGCGAAGATCAGCCTCTGCTGATCGGGA 86566 Query 45231 GGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCG 45290 |||||||||||||| ||||| || || || | |||| ||||||| || |||| Sbjct 86567 GGAATGCCTTCTTTGTCTTGGATCTTGGCCTTCACATTCTCTATGGTGTCGCTAGGCTCG 86626 Query 45291 ACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 || || ||||| | || ||||| || || || || ||||| || ||||| Sbjct 86627 ACCTCAAGAGTGATGGTCTTGCCAGTCAGGGTCTTCACAAAGATCTGCAT 86676 Score = 82.4 bits (90), Expect = 7e-11 Identities = 146/213 (69%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 45128 CAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGAATC 45187 || ||| || ||||| || || ||||| ||||| || || ||| | ||| ||| Sbjct 86236 CAGCACCAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGCCCATC 86295 Query 45188 GTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATC 45247 |||| || || || ||| | |||| | ||||| || || |||||||||||||| || Sbjct 86296 TTCCAGCTGCTTGCCAGCGAAGATCAGCCTCTGCTGATCGGGAGGAATGCCTTCTTTGTC 86355 Query 45248 TTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGT 45307 ||| || || || | ||| | |||||| | |||||| ||||| || | || Sbjct 86356 TTGGATCTTGGCCTTTACGTTTTCAATGGTGTCACTGGGCTCGACCTCGAGCGTGATGGT 86415 Query 45308 TTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 ||||| || || || || ||||| || ||||| Sbjct 86416 CTTGCCAGTCAGGGTCTTCACAAAGATCTGCAT 86448 >seq1256 Length=67100 Score = 84.2 bits (92), Expect = 2e-11 Identities = 79/101 (78%), Gaps = 0/101 (0%) Strand=Plus/Minus Query 123606 GAAACCGGAACGCCGTACATGCTCTACAAAGACGCCTGCAACAGGAAAACCAATCAGAGC 123665 || || || ||||| |||||||| ||||||||| | ||||||||||| | ||||||| Sbjct 29841 GAGACTGGCACGCCTTACATGCTGTACAAAGACTCTTGCAACAGGAAGAGCAATCAGCAG 29782 Query 123666 AACTTGGGAACAATAAAATGTAGTAATCTTTGCTCCGAAAT 123706 ||| |||| || || ||||| || ||||| ||| | || || Sbjct 29781 AACCTGGGGACCATCAAATGCAGCAATCTGTGCACAGAGAT 29741 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 451809392327920