Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Callipepla_20squamata_20[genbank_20GCA_5F002218305.1_202017-07-13] 34,302 sequences; 1,045,281,893 total letters Query= NC_012783.2 Length=226205 Score E Sequences producing significant alignments: (Bits) Value seq44 125 1e-23 seq598 123 4e-23 >seq44 Length=2569273 Score = 125 bits (138), Expect = 1e-23 Identities = 207/299 (69%), Gaps = 0/299 (0%) Strand=Plus/Plus Query 8880 GGAACGCGGCCAACGGACATCCCTTCACATTGGCACAAATGAGGGACTGAATGGTTGCGG 8939 ||||||| | ||||||| |||||| ||| || | ||| || | | || | Sbjct 1557540 GGAACGCCACGTACGGACACTTCTTCACGTTGAGGCACACGAGTTTCTTCAGCGACGCTG 1557599 Query 8940 TTTTCACGATGTCTAAACCTACGTCCCCGCCGAAGGTGCTGGGTTTCCAGTACGCCGGGG 8999 | |||||||| || || || | ||||| ||||| ||||| ||||||||| |||||| Sbjct 1557600 TCTTCACGATCTCGAAGCCGGTCGCTCCGCCAAAGGTACTGGGCTTCCAGTACTCCGGGG 1557659 Query 9000 AGCAGATGACGTTCGCCATGAGCCCTTTCAAGGAAAACGGAGCCCCCAGCTCGATGATGC 9059 |||||||| |||| | | || || |||| |||||||||||| || | ||| | |||| Sbjct 1557660 AGCAGATGGGGTTCCCAAGAAGTCCCTTCAGGGAAAACGGAGCGCCAATCTCCACCATGC 1557719 Query 9060 TCTCACCGAAGATGGCACCGGGACGCGGTTTTTCGACGATGAAGCCAGTGTAGAGTTCGA 9119 | || ||||| ||| | |||| | ||||| || | | || || | || | || | Sbjct 1557720 TTTCCCCGAAAATGCCGTCGGGTTGGGGTTTCTCAAGCAGCAACCCTGGATAAAACTCCA 1557779 Query 9120 CAGCCTCGACGTCGCCATAGAGGGCTTCCAACTCGGCAGCTATCTCCTTCTCACCTACA 9178 ||| || | ||| ||||| || | |||| ||| || || |||||| ||| ||| || Sbjct 1557780 GAGCGTCAATGTCTCCATACAGCTCCTCCAGCTCTGCTGCCTTCTCCTCCTCTCCTGCA 1557838 >seq598 Length=532752 Score = 123 bits (136), Expect = 4e-23 Identities = 167/233 (72%), Gaps = 0/233 (0%) Strand=Plus/Plus Query 9736 GTGGTTTGAAACAACTGCTCGTCACCCCATTCCGGGTGTTCGTGTTTGAGAACATCGCAG 9795 || || || || | |||||| ||| |||| || || || || ||||| | | || ||| Sbjct 405787 GTAGTCTGGAATAGCTGCTCATCATCCCACTCTGGATGCTCTTGTTTCAAGATGTCACAG 405846 Query 9796 ACCCTGTTGTGTTCTCTCAGCCATATGGTGGCGTACATCATTAAACCCGGCACTAAACCA 9855 || || |||||||||||||||||||| || || |||||||||| || || || || ||| Sbjct 405847 ACTCTATTGTGTTCTCTCAGCCATATTGTTGCATACATCATTAGGCCTGGGACCAAGCCA 405906 Query 9856 AACACTTCATTCCCCACTGCAAAGCGCAGATCATCGGGCACTTCGGGCGCATACAGCATA 9915 ||||| || | || || | ||| |||| | || || || | || | ||| | ||| Sbjct 405907 AACACCTCCTGGCCAACAGAAAACTGCAGGTGCTCAGGAACATGAGGAGGATAGATCATC 405966 Query 9916 TGCACCTGGGTCTCTTTGACGGTGGGGGGATACATTTCACCGTCAATAACCTG 9968 | | || || || || || || || ||||||||||| || ||||| | ||| Sbjct 405967 TCTGCTTGAGTGTCCTTCACTGTCGGTGGATACATTTCTCCATCAATTATCTG 406019 Score = 93.3 bits (102), Expect = 6e-14 Identities = 192/286 (67%), Gaps = 0/286 (0%) Strand=Plus/Plus Query 8880 GGAACGCGGCCAACGGACATCCCTTCACATTGGCACAAATGAGGGACTGAATGGTTGCGG 8939 |||| || | || ||||| || ||||||||| || ||||| ||| | || || | Sbjct 403807 GGAAAGCAGTGAAAGGACAACCTTTCACATTGTTGCAGATGAGCTTCTGTAAGGAGGCAG 403866 Query 8940 TTTTCACGATGTCTAAACCTACGTCCCCGCCGAAGGTGCTGGGTTTCCAGTACGCCGGGG 8999 | || | || || || || || | || || |||||||| || ||||| ||| | || | Sbjct 403867 TATTGATTATTTCAAACCCCACTTTTCCACCAAAGGTGCTTGGCTTCCAATACTCAGGAG 403926 Query 9000 AGCAGATGACGTTCGCCATGAGCCCTTTCAAGGAAAACGGAGCCCCCAGCTCGATGATGC 9059 |||| || || |||| || ||||| | || || || || || | || | || Sbjct 403927 AGCATATTGTATTTCCCATCAGTCCTTTTAGAGAGAATGGTGCACCAATTTCCACCATTG 403986 Query 9060 TCTCACCGAAGATGGCACCGGGACGCGGTTTTTCGACGATGAAGCCAGTGTAGAGTTCGA 9119 | ||||| ||||||||||| || | || ||||| || | | ||| | || || || | Sbjct 403987 TTTCACCAAAGATGGCACCTGGTCTTGGCTTTTCTACAAGAAGGCCTGGATACAGCTCCA 404046 Query 9120 CAGCCTCGACGTCGCCATAGAGGGCTTCCAACTCGGCAGCTATCTC 9165 ||| || | ||| ||||| || |||| | || ||||| || || Sbjct 404047 TAGCATCTATGTCTCCATAAAGCTCTTCTAGTTCAGCAGCCATTTC 404092 Score = 93.3 bits (102), Expect = 6e-14 Identities = 161/232 (69%), Gaps = 4/232 (2%) Strand=Plus/Plus Query 9493 ATGGAATTGTTGTAAACGAAGTGTTCGTAACCATACTTCGCGTCGCCTATGCGAAAATCA 9552 || || |||||||| | || || | | || |||| | ||| | ||| ||||| Sbjct 404599 ATAGAGTTGTTGTAGAGAAACTGCTGGAAAGTGTACTCCTGGTCACGTATCTGAAAAGTG 404658 Query 9553 TCAGGCAACAGAGAATGCCAGCGGTAGAGGGTATTGAACTCGGCCGCTATTCGGTTCTGG 9612 ||||| | || | |||||| |||| || |||||||| || || || |||||||||||| Sbjct 404659 TCAGGTAGAAGTGGGTGCCAGTGGTACAGAGTATTGAATTCAGCTGCAATTCGGTTCTGG 404718 Query 9613 TACTGAAA--GGCGGTACCGAACAGTAACTCCGGGTCAAAGATTAGCTGGAAGTGGTACC 9670 || ||||| | ||| |||||| | ||| || ||||| | || | ||||||||| | Sbjct 404719 TATTGAAAACGCTGGT--TGAACAGAAGCTCAGGATCAAACTTCAGTTTGAAGTGGTAGC 404776 Query 9671 CGCTGAGTTGCTGGACATACTGTGTGATTATAATGTTAATGGTTTCCCCGGT 9722 | || | ||||| ||||| | | || | || || || ||||| || || Sbjct 404777 CACTCAAGTGCTGCACATAATCTTCAATAACTATCTTTATTGTTTCTCCTGT 404828 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 723417683526800