Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Callipepla_20squamata_20[genbank_20GCA_5F002218305.1_202017-07-13] 34,302 sequences; 1,045,281,893 total letters Query= NC_013756.1 Length=368454 Score E Sequences producing significant alignments: (Bits) Value seq384 136 9e-27 seq448 122 2e-22 >seq384 Length=852418 Score = 136 bits (150), Expect = 9e-27 Identities = 156/210 (74%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 199417 CAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATC 199476 ||| || ||||| || || |||||||| |||| ||||||||||| || || | ||||| Sbjct 85780 CAGCACCAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGCCCATC 85839 Query 199477 TTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTC 199536 |||||||||||| || |||||||| || | |||||| || ||| ||| |||||| || Sbjct 85840 TTCCAGCTGCTTACCAGCGAAGATCAGCCTCTGCTGATCGGGAGGAATGCCTTCTTTGTC 85899 Query 199537 CTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGT 199596 || ||||| ||||||| ||| | |||||| | | || || || | ||||| || Sbjct 85900 TTGGATCTTGGCCTTCACGTTTTCAATGGTGTCACTGGGCTCAACTTCAAGGGTGATGGT 85959 Query 199597 CTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 ||| || || || || ||||| || || || Sbjct 85960 CTTGCCAGTCAGGGTCTTCACGAAGATCTG 85989 Score = 136 bits (150), Expect = 9e-27 Identities = 156/210 (74%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 199417 CAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATC 199476 ||| || ||||| || || |||||||| |||| ||||||||| | || || | ||||| Sbjct 86236 CAGCACCAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGCCCATC 86295 Query 199477 TTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTC 199536 |||||||||||| || |||||||| || | |||||| || ||| ||| |||||| || Sbjct 86296 TTCCAGCTGCTTGCCAGCGAAGATCAGCCTCTGCTGATCGGGAGGAATGCCTTCTTTGTC 86355 Query 199537 CTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGT 199596 || ||||| ||| ||| ||| | |||||| | | || || || | |||||| || Sbjct 86356 TTGGATCTTGGCCTTTACGTTTTCAATGGTGTCACTGGGCTCGACCTCGAGCGTGATGGT 86415 Query 199597 CTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 ||| || || || || |||||||| || || Sbjct 86416 CTTGCCAGTCAGGGTCTTCACAAAGATCTG 86445 Score = 118 bits (130), Expect = 2e-21 Identities = 152/210 (72%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 199417 CAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATC 199476 ||| || ||||| || || || || || |||| ||||||||||| || || | || || Sbjct 86464 CAGCACCAGGTGCAGGGTGGATTCTTTCTGGATGTTGTAGTCAGACAGGGTGCGCCCGTC 86523 Query 199477 TTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTC 199536 |||||||||||| || |||||||| || | |||||| || ||| ||| |||||| || Sbjct 86524 TTCCAGCTGCTTACCAGCGAAGATCAGCCTCTGCTGATCGGGAGGAATGCCTTCTTTGTC 86583 Query 199537 CTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGT 199596 || ||||| |||||| || | |||||| | | || || || | ||||| || Sbjct 86584 TTGGATCTTGGCCTTCACATTCTCTATGGTGTCGCTAGGCTCGACCTCAAGAGTGATGGT 86643 Query 199597 CTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 ||| || || || || |||||||| || || Sbjct 86644 CTTGCCAGTCAGGGTCTTCACAAAGATCTG 86673 Score = 104 bits (114), Expect = 6e-17 Identities = 149/210 (71%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 199417 CAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATC 199476 ||| || ||||| || || || || || |||| ||||||||| | || || | || || Sbjct 86008 CAGCACCAGGTGCAGGGTGGATTCTTTCTGGATGTTGTAGTCGGACAGGGTGCGCCCGTC 86067 Query 199477 TTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTC 199536 |||||||||||| || || ||||| || | |||||| || ||| ||| |||||| || Sbjct 86068 TTCCAGCTGCTTACCAGCAAAGATCAGCCTCTGCTGATCGGGAGGAATGCCTTCTTTGTC 86127 Query 199537 CTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGT 199596 || ||||| |||||| || | |||||| | | || || || | ||||| || Sbjct 86128 TTGGATCTTGGCCTTCACATTCTCTATGGTGTCACTGGGCTCGACCTCAAGAGTGATTGT 86187 Query 199597 CTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 ||| || || | |||||||| || || || Sbjct 86188 CTTGCCAGTCAAGGTTTTCACGAAGATCTG 86217 >seq448 Length=747048 Score = 122 bits (134), Expect = 2e-22 Identities = 153/210 (73%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 199417 CAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATC 199476 |||||| || || || || |||||||| |||| ||||||||| | || || | ||||| Sbjct 684096 CAGGACGAGATGCAGGGTGGACTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGCCCATC 684037 Query 199477 TTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTC 199536 |||||||||||| || || || || || | |||||| || || || ||||| || Sbjct 684036 TTCCAGCTGCTTGCCAGCAAAAATCAGCCTCTGCTGATCGGGGGGGATGCCTTCCTTGTC 683977 Query 199537 CTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGT 199596 ||| ||||| ||| ||| |||| |||||| | | || || ||||| ||||| || Sbjct 683976 CTGGATCTTGGCCTTGACGTTCTCGATGGTGTCGCTGGGCTCCACCTCCAAGGTGATGGT 683917 Query 199597 CTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 ||| || ||||| || ||||| || || || Sbjct 683916 CTTGCCGGTGAGGGTCTTCACGAAGATCTG 683887 Score = 122 bits (134), Expect = 2e-22 Identities = 153/210 (73%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 199417 CAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATC 199476 ||||||||| || || || |||||||| |||| ||||||||| | || || | || || Sbjct 684566 CAGGACAAGATGCAGGGTGGACTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGCCCGTC 684507 Query 199477 TTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTC 199536 |||||||||||| || || || || || | |||||| || || || ||||| || Sbjct 684506 TTCCAGCTGCTTGCCAGCAAAAATCAGCCTCTGCTGATCGGGGGGGATGCCTTCCTTGTC 684447 Query 199537 CTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGT 199596 ||| ||||| ||| ||| |||| |||||| | | || || ||||| ||||| || Sbjct 684446 CTGGATCTTGGCCTTGACGTTCTCGATGGTGTCACTGGGCTCCACCTCCAAGGTGATGGT 684387 Query 199597 CTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 ||||| || || || |||||||| || || Sbjct 684386 TTTACCAGTCAGGGTCTTCACAAAGATCTG 684357 Score = 109 bits (120), Expect = 1e-18 Identities = 150/210 (71%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 199417 CAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATC 199476 ||| || ||||| || || |||||||| |||| ||||||||| | || || | ||||| Sbjct 684794 CAGCACCAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGCCCATC 684735 Query 199477 TTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTC 199536 |||||||||||| || || || || || | |||||| || || || ||||| || Sbjct 684734 TTCCAGCTGCTTGCCAGCAAAAATCAGCCTCTGCTGATCGGGGGGGATGCCTTCCTTGTC 684675 Query 199537 CTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGT 199596 ||| ||||| ||| ||| |||| ||| || | | || || ||||| ||||| || Sbjct 684674 CTGGATCTTGGCCTTGACGTTCTCGATGGTATCACTGGGCTCCACCTCCAAGGTGATGGT 684615 Query 199597 CTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 ||||| || | || ||||| || || || Sbjct 684614 TTTACCAGTCAAGGTCTTCACGAAGATCTG 684585 Score = 84.2 bits (92), Expect = 5e-11 Identities = 96/129 (74%), Gaps = 0/129 (0%) Strand=Plus/Minus Query 199417 CAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATC 199476 ||| || ||||| || || |||||||| |||| ||||||||| | || || | ||||| Sbjct 684338 CAGCACCAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGCCCATC 684279 Query 199477 TTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTC 199536 |||||||||||| || || || || || | |||||| || || || ||||| || Sbjct 684278 TTCCAGCTGCTTGCCAGCAAAAATCAGCCTCTGCTGATCGGGGGGGATGCCTTCCTTGTC 684219 Query 199537 CTGAATCTT 199545 ||| ||||| Sbjct 684218 CTGGATCTT 684210 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1178403470588234