Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Callipepla_20squamata_20[genbank_20GCA_5F002218305.1_202017-07-13] 34,302 sequences; 1,045,281,893 total letters Query= NC_013797.1 Length=108592 Score E Sequences producing significant alignments: (Bits) Value seq384 82.4 5e-11 >seq384 Length=852418 Score = 82.4 bits (90), Expect = 5e-11 Identities = 158/231 (68%), Gaps = 4/231 (2%) Strand=Plus/Plus Query 39492 GCCGCCTCGCAAACGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGC 39551 ||| || | || |||||| |||| |||| ||| |||||| || || || || |||| Sbjct 85993 GCCTCCCCTCAGACGCAGCACCAGGTGCAGGGTGGATTCTTTCTGGATGTTGTAGTCGGA 86052 Query 39552 CAAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGAGGG 39611 || ||| | || |||| || || || |||| || | | ||||||||| | || Sbjct 86053 CAGGGTGCGCCCGTCTTCCAGCTGCTTACCAGCAAAGATCAGCCTCTGCTGATCGGGAGG 86112 Query 39612 TACGCCTTCTTTGTCGCATATTTTTTGTTTAATCGTCGCTACTGTGT--CTGCGCTTTCC 39669 | |||||||||||| || || || | || ||| |||| ||| || || Sbjct 86113 AATGCCTTCTTTGTCTTGGATCTTGGCCTTCACATTCTCTATGGTGTCACTGGGC--TCG 86170 Query 39670 ACGTCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTACGAAGATCTGCATG 39720 || || | ||| ||||| || || || || ||||| ||||||||||||||| Sbjct 86171 ACCTCAAGAGTGATTGTCTTGCCAGTCAAGGTTTTCACGAAGATCTGCATG 86221 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 347224380184766