Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Callipepla_20squamata_20[genbank_20GCA_5F002218305.1_202017-07-13] 34,302 sequences; 1,045,281,893 total letters Query= NC_013953.1 Length=156344 Score E Sequences producing significant alignments: (Bits) Value seq384 163 3e-35 seq448 150 2e-31 seq518 87.8 2e-12 seq648 86.0 6e-12 seq184 82.4 8e-11 >seq384 Length=852418 Score = 163 bits (180), Expect = 3e-35 Identities = 175/229 (76%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || || || || || || || ||||| |||||||| |||| |||||| ||| Sbjct 86448 ATGCAGATCTTTGTGAAGACCCTGACTGGCAAGACCATCACGCTCGAGGTCGAGCCCAGT 86389 Query 38304 GACAGCGT-GCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362 |||| | | | ||||| | || | || |||| |||||||| || ||||| |||| || Sbjct 86388 GACACCATTGAAAACG-TAAAGGCCAAGATCCAAGACAAAGAAGGCATTCCTCCCGATCA 86330 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 ||| |||| || | ||| ||||| |||||||| || | ||||||||| ||||||||| Sbjct 86329 GCAGAGGCTGATCTTCGCTGGCAAGCAGCTGGAAGATGGGCGCACCCTGTCCGACTACAA 86270 Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGGC 38471 |||||| ||||| | || ||||| ||||||||||| ||||||| ||| Sbjct 86269 CATCCAGAAGGAGTCCACCCTGCACCTGGTGCTGCGTCTGAGAGGTGGC 86221 Score = 154 bits (170), Expect = 1e-32 Identities = 173/229 (76%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || ||||| || || || || ||||| ||||||||| | || || ||| ||| Sbjct 85992 ATGCAGATCTTCGTGAAGACCCTGACTGGCAAGACCATCACCCTTGAAGTTGAGCCCAGT 85933 Query 38304 GACAGCGT-GCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362 |||| | | | ||||| | || | || |||| |||||||| || ||||| |||| || Sbjct 85932 GACACCATTGAAAACG-TGAAGGCCAAGATCCAAGACAAAGAAGGCATTCCTCCCGATCA 85874 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 ||| |||| || | ||| || || |||||||| || | ||||||||| |||||||| Sbjct 85873 GCAGAGGCTGATCTTCGCTGGTAAGCAGCTGGAAGATGGGCGCACCCTGTCTGACTACAA 85814 Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGGC 38471 |||||| ||||| | || ||||| ||||||||||| ||||||| ||| Sbjct 85813 CATCCAGAAGGAGTCCACCCTGCACCTGGTGCTGCGTCTGAGAGGAGGC 85765 Score = 143 bits (158), Expect = 3e-29 Identities = 171/232 (74%), Gaps = 0/232 (0%) Strand=Plus/Minus Query 38240 AAAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGC 38299 ||| ||||| || || || || || || || ||||| |||||||| | || |||||| | Sbjct 86680 AAACATGCAGATCTTTGTGAAGACCCTGACTGGCAAGACCATCACTCTTGAGGTCGAGCC 86621 Query 38300 CACCGACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGA 38359 | ||||| | | | | | || | || |||| |||||||| || ||||| |||| Sbjct 86620 TAGCGACACCATAGAGAATGTGAAGGCCAAGATCCAAGACAAAGAAGGCATTCCTCCCGA 86561 Query 38360 CCAACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTA 38419 || ||| |||| || | ||| || || |||||||| |||| ||||||||| ||||| Sbjct 86560 TCAGCAGAGGCTGATCTTCGCTGGTAAGCAGCTGGAAGACGGGCGCACCCTGTCTGACTA 86501 Query 38420 CAACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGGC 38471 ||||||||| || ||| | || ||||| ||||||||||| |||| || ||| Sbjct 86500 CAACATCCAGAAAGAATCCACCCTGCACCTGGTGCTGCGTCTGAGGGGAGGC 86449 Score = 141 bits (156), Expect = 9e-29 Identities = 168/228 (74%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || ||||| ||||| | || ||||| || ||||| | || |||||| ||| Sbjct 86220 ATGCAGATCTTCGTGAAAACCTTGACTGGCAAGACAATCACTCTTGAGGTCGAGCCCAGT 86161 Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAA 38363 |||| | | | | | || | || |||| |||||||| || ||||| |||| || Sbjct 86160 GACACCATAGAGAATGTGAAGGCCAAGATCCAAGACAAAGAAGGCATTCCTCCCGATCAG 86101 Query 38364 CAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 38423 ||| |||| || | || || || |||||||| |||| ||||||||| |||||||||| Sbjct 86100 CAGAGGCTGATCTTTGCTGGTAAGCAGCTGGAAGACGGGCGCACCCTGTCCGACTACAAC 86041 Query 38424 ATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGGC 38471 ||||| || ||| | || ||||| ||||||||||| |||| || ||| Sbjct 86040 ATCCAGAAAGAATCCACCCTGCACCTGGTGCTGCGTCTGAGGGGAGGC 85993 >seq448 Length=747048 Score = 150 bits (166), Expect = 2e-31 Identities = 174/232 (75%), Gaps = 2/232 (1%) Strand=Plus/Plus Query 38241 AAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCC 38300 || ||||| || ||||| || || ||||| ||||| ||||||||| | || || ||| || Sbjct 683881 AACATGCAGATCTTCGTGAAGACCCTCACCGGCAAGACCATCACCTTGGAGGTGGAGCCC 683940 Query 38301 ACCGACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGA 38359 | ||||| | | | |||| | || | || |||| ||||| || || || ||| |||| Sbjct 683941 AGCGACACCATCGAGAACG-TCAAGGCCAAGATCCAGGACAAGGAAGGCATCCCCCCCGA 683999 Query 38360 CCAACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTA 38419 || ||| |||| |||| || ||||| |||||||| || | ||||||||| |||||| Sbjct 684000 TCAGCAGAGGCTGATTTTTGCTGGCAAGCAGCTGGAAGATGGGCGCACCCTGTCCGACTA 684059 Query 38420 CAACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGGC 38471 ||||||||| ||||| | || |||||| | || ||||| |||| || ||| Sbjct 684060 CAACATCCAGAAGGAGTCCACCCTGCATCTCGTCCTGCGCCTGAGGGGAGGC 684111 Score = 140 bits (154), Expect = 3e-28 Identities = 170/229 (74%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || || || || || || || || |||||||||||| | || || ||| ||| Sbjct 684354 ATGCAGATCTTTGTGAAGACCCTGACTGGTAAAACCATCACCTTGGAGGTGGAGCCCAGT 684413 Query 38304 GACAGCGT-GCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362 |||| | | | |||| | || | || |||| ||||| || || || ||| |||| || Sbjct 684414 GACACCATCGAGAACG-TCAAGGCCAAGATCCAGGACAAGGAAGGCATCCCCCCCGATCA 684472 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 ||| |||| |||| || ||||| |||||||| |||| ||||||||| ||||||||| Sbjct 684473 GCAGAGGCTGATTTTTGCTGGCAAGCAGCTGGAAGACGGGCGCACCCTGTCCGACTACAA 684532 Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGGC 38471 |||||| ||||| | || |||||| | || ||||| |||| || ||| Sbjct 684533 CATCCAGAAGGAGTCCACCCTGCATCTTGTCCTGCGCCTGAGGGGAGGC 684581 Score = 134 bits (148), Expect = 1e-26 Identities = 168/228 (74%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || ||||| || || | || || |||||||||||| | || || ||| ||| Sbjct 684582 ATGCAGATCTTCGTGAAGACCTTGACTGGTAAAACCATCACCTTGGAGGTGGAGCCCAGT 684641 Query 38304 GACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362 || | | | | |||| | || | || |||| ||||| || || || ||| |||| || Sbjct 684642 GATACCATCGAGAACG-TCAAGGCCAAGATCCAGGACAAGGAAGGCATCCCCCCCGATCA 684700 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 ||| |||| |||| || ||||| |||||||| || | ||||||||| ||||||||| Sbjct 684701 GCAGAGGCTGATTTTTGCTGGCAAGCAGCTGGAAGATGGGCGCACCCTGTCCGACTACAA 684760 Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGG 38470 |||||| ||||| | || ||||| |||||||||| |||| || || Sbjct 684761 CATCCAGAAGGAGTCCACCCTGCACCTGGTGCTGCGCCTGAGGGGTGG 684808 Score = 111 bits (122), Expect = 2e-19 Identities = 111/144 (77%), Gaps = 0/144 (0%) Strand=Plus/Plus Query 38328 AAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAACAGCGGCTCATTTACGCGGGCAAA 38387 || |||| ||||| || || || ||| |||| || ||| |||| |||| || ||||| Sbjct 684210 AAGATCCAGGACAAGGAAGGCATCCCCCCCGATCAGCAGAGGCTGATTTTTGCTGGCAAG 684269 Query 38388 CAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAAAAGGAAGCGACGCTGCAT 38447 |||||||| || | ||||||||| ||||||||||||||| ||||| | || ||||| Sbjct 684270 CAGCTGGAAGATGGGCGCACCCTGTCCGACTACAACATCCAGAAGGAGTCCACCCTGCAC 684329 Query 38448 TTGGTGCTGCGTTTGAGAGGCGGC 38471 |||||||||| |||| || ||| Sbjct 684330 CTGGTGCTGCGCCTGAGGGGAGGC 684353 >seq518 Length=643042 Score = 87.8 bits (96), Expect = 2e-12 Identities = 95/126 (75%), Gaps = 0/126 (0%) Strand=Plus/Plus Query 132917 CCTCGTCCCTGGAAATGAGTTCGTTGCTGAAAGTCAAGCCGGGCATGAGGCCGCGTTTTT 132976 |||| || ||| ||| ||||| ||| ||||||||| || ||||| ||||| | || | Sbjct 337086 CCTCATCTCTGCTAATAAGTTCATTGGAGAAAGTCAATCCAGGCATCAGGCCCCTCTTCT 337145 Query 132977 TGAGCCAAAATATGGCGGCGAAACTGCCCGAAAAGAAGACGCCCTCGACGGCCGCGAAAG 133036 | ||||||||||| || || || ||||||||||||| ||| || || || || || | Sbjct 337146 TCAGCCAAAATATAGCAGCAAATGAACCCGAAAAGAAGATGCCTTCAACTGCAGCAAAGG 337205 Query 133037 CCACCA 133042 | |||| Sbjct 337206 CGACCA 337211 >seq648 Length=473587 Score = 86.0 bits (94), Expect = 6e-12 Identities = 73/89 (82%), Gaps = 1/89 (1%) Strand=Plus/Minus Query 38346 GGAATTCCCGCCGACCAACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGC 38405 ||||| ||| ||||||| ||||| || || | |||||| || |||||||| |||| ||| Sbjct 249593 GGAATCCCCCCCGACCAGCAGCGCCTGATCTTCGCGGGGAAGCAGCTGGAGGACGGCCGC 249534 Query 38406 ACCCTCAACGACTACAACATCCA-AAAGG 38433 || ||| ||||||||||||||| ||||| Sbjct 249533 ACGCTCGCCGACTACAACATCCAGAAAGG 249505 >seq184 Length=1437213 Score = 82.4 bits (90), Expect = 8e-11 Identities = 74/93 (80%), Gaps = 0/93 (0%) Strand=Plus/Minus Query 133189 TACATTTCCGAGTGTACGTTCTCCATGGCGATTTGAAAGCCGTAAAAGCACCGCGCCTCG 133248 |||||||| ||||||| ||| |||||||| || || ||||| || || || |||||||| Sbjct 72386 TACATTTCTGAGTGTATGTTTTCCATGGCAATCTGGAAGCCATAGAAACAACGCGCCTCT 72327 Query 133249 ACCACCTGCACTTCTTGAGCGAAACGCTCGACC 133281 | ||||||||||||| ||| ||||| ||| Sbjct 72326 GTAATCTGCACTTCTTGACTGAACCGCTCCACC 72294 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 499958338407680