Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Callipepla_20squamata_20[genbank_20GCA_5F002218305.1_202017-07-13] 34,302 sequences; 1,045,281,893 total letters Query= NC_014649.1 Length=1181549 Score E Sequences producing significant alignments: (Bits) Value seq82 107 1e-17 seq436 102 6e-16 >seq82 Length=2126464 Score = 107 bits (118), Expect = 1e-17 Identities = 113/149 (76%), Gaps = 0/149 (0%) Strand=Plus/Plus Query 518165 TTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAAAACA 518224 || || || |||||||| || | ||||||||| ||||| || || ||||| | || ||| Sbjct 1120836 TTCTTGTCCAGACCATAGGCTATAGCAGCAGCTGTTGGCTCGTTGATAATCCGCAGTACA 1120895 Query 518225 TTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAATAT 518284 || || || ||||| |||| |||||||| ||||| || | || || ||||||||||| Sbjct 1120896 TTCAGCCCTGCAATGGTTCCAGCATCTTTTGTGGCCTGCCGCTGGGAGTCGTTAAAATAG 1120955 Query 518285 GCAGGAACAGTAATAACGGCATCAGTTAC 518313 || || ||||| | || |||| ||| || Sbjct 1120956 GCTGGTACAGTGACTACAGCATTAGTGAC 1120984 >seq436 Length=767639 Score = 102 bits (112), Expect = 6e-16 Identities = 98/126 (78%), Gaps = 0/126 (0%) Strand=Plus/Minus Query 366993 TGTAGTAGCCACAATAGCATTTGGTATGGGTATTAATAAACCGGATGTTAGAGTTGTTAT 367052 ||| ||||| || | |||||||| ||||| || |||||| | ||| | | | ||||| Sbjct 625910 TGTTGTAGCTACGGTGGCATTTGGAATGGGCATCAATAAAGCAGATATCCGGATGGTTAT 625851 Query 367053 TCATTATGGAGCTCCCAAGAATATTGAAGGTTATTATCAAGAAATTGGTAGAGCAGGTCG 367112 ||||||||| || || ||| | || ||| |||||||||||||| || ||||| ||||| Sbjct 625850 TCATTATGGTGCCCCTAAGGAAATGGAATCCTATTATCAAGAAATAGGAAGAGCTGGTCG 625791 Query 367113 TGATGG 367118 |||||| Sbjct 625790 TGATGG 625785 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3779120221769212