Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Callipepla_20squamata_20[genbank_20GCA_5F002218305.1_202017-07-13] 34,302 sequences; 1,045,281,893 total letters Query= NC_014789.1 Length=184409 Score E Sequences producing significant alignments: (Bits) Value seq1256 82.4 9e-11 >seq1256 Length=67100 Score = 82.4 bits (90), Expect = 9e-11 Identities = 102/140 (73%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 106505 GTGTACTCTAAAATTTCTGTACACAAGTTGGAACTCTTAATCGTCCCCAAATTCTTTTGG 106564 || ||||| | || ||||| |||| ||| | || || ||||||| |||| || Sbjct 29729 GTATACTCCACTATCTCTGTGCACAGATTGCTGCATTTGATGGTCCCCAGGTTCTGCTGA 29788 Query 106565 TTACTCTTTTTGTTGCACGCATCCTTGTAGAGCATGTAGGGCGTCCCCGTCTCCGTCTGT 106624 || ||||| ||||||| | || ||||| |||||||| ||||| || ||||||||||| Sbjct 29789 TTGCTCTTCCTGTTGCAAGAGTCTTTGTACAGCATGTAAGGCGTGCCAGTCTCCGTCTGC 29848 Query 106625 GACTTGAGAATTGCCTTCCA 106644 |||| || || || | ||| Sbjct 29849 GACTCGATGATGGCGTACCA 29868 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 589727830982480