Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Callipepla_20squamata_20[genbank_20GCA_5F002218305.1_202017-07-13] 34,302 sequences; 1,045,281,893 total letters Query= NC_015398.1 Length=101487 Score E Sequences producing significant alignments: (Bits) Value seq448 104 2e-17 seq384 102 5e-17 >seq448 Length=747048 Score = 104 bits (114), Expect = 2e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 34755 CCTCCCCTCAACCTCAAAACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAA 34814 |||||||||| | || || | || | ||| || ||||| ||||| ||||| || Sbjct 684580 CCTCCCCTCAGGCGCAGGACAAGATGCAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAC 684521 Query 34815 AGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGC 34874 ||| | || | || |||||||| || || ||||| || || | ||||| || | || Sbjct 684520 AGGGTGCGCCCGTCTTCCAGCTGCTTGCCAGCAAAAATCAGCCTCTGCTGATCGGGGGGG 684461 Query 34875 ACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAACA 34934 | || |||||||| ||||| |||||| | || | |||| || ||| || Sbjct 684460 ATGCCTTCCTTGTCCTGGATCTTGGCCTTGACGTTCTCGATGGTGTCACTGGGCTCCACC 684401 Query 34935 TCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACAAAGATCTGCAT 34981 || | ||| |||||||| || || || |||||||||||||||||||| Sbjct 684400 TCCAAGGTGATGGTTTTACCAGTCAGGGTCTTCACAAAGATCTGCAT 684354 Score = 104 bits (114), Expect = 2e-17 Identities = 161/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 34752 TTTCCTCCCCTCAACCTCAAAACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCC 34811 || || ||||||| | || |||| ||| | ||| || ||||| ||||| ||||| Sbjct 684811 TTACCACCCCTCAGGCGCAGCACCAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCG 684752 Query 34812 GAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGC 34871 || ||| | || |||| |||||||| || || ||||| || || | ||||| || | Sbjct 684751 GACAGGGTGCGCCCATCTTCCAGCTGCTTGCCAGCAAAAATCAGCCTCTGCTGATCGGGG 684692 Query 34872 GGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCA 34931 || | || |||||||| ||||| |||||| | || | |||| || ||| Sbjct 684691 GGGATGCCTTCCTTGTCCTGGATCTTGGCCTTGACGTTCTCGATGGTATCACTGGGCTCC 684632 Query 34932 ACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACAAAGATCTGCAT 34981 || || | ||| |||||||| || || | |||||||| ||||||||||| Sbjct 684631 ACCTCCAAGGTGATGGTTTTACCAGTCAAGGTCTTCACGAAGATCTGCAT 684582 Score = 100 bits (110), Expect = 2e-16 Identities = 160/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 34755 CCTCCCCTCAACCTCAAAACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAA 34814 |||||||||| | || || | || | ||| || ||||| ||||| ||||| || Sbjct 684110 CCTCCCCTCAGGCGCAGGACGAGATGCAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAC 684051 Query 34815 AGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGC 34874 ||| | || |||| |||||||| || || ||||| || || | ||||| || | || Sbjct 684050 AGGGTGCGCCCATCTTCCAGCTGCTTGCCAGCAAAAATCAGCCTCTGCTGATCGGGGGGG 683991 Query 34875 ACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAACA 34934 | || |||||||| ||||| |||||| | || | || | || ||| || Sbjct 683990 ATGCCTTCCTTGTCCTGGATCTTGGCCTTGACGTTCTCGATGGTGTCGCTGGGCTCCACC 683931 Query 34935 TCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACAAAGATCTGCATATT 34984 || | ||| ||||| || || ||||| |||||||| ||||||||||| || Sbjct 683930 TCCAAGGTGATGGTCTTGCCGGTGAGGGTCTTCACGAAGATCTGCATGTT 683881 >seq384 Length=852418 Score = 102 bits (112), Expect = 5e-17 Identities = 161/231 (70%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 34751 ATTTCCTCCCCTCAACCTCAAAACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTC 34810 ||| ||||| |||| | || |||| ||| | ||| || ||||| ||||| ||||| Sbjct 85762 ATTGCCTCCTCTCAGACGCAGCACCAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTC 85821 Query 34811 CGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTG 34870 || ||| | || |||| |||||||| || || || || || || | ||||| || | Sbjct 85822 AGACAGGGTGCGCCCATCTTCCAGCTGCTTACCAGCGAAGATCAGCCTCTGCTGATCGGG 85881 Query 34871 CGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTC 34930 || | || || ||||| ||||| || ||| | | || | |||| || ||| Sbjct 85882 AGGAATGCCTTCTTTGTCTTGGATCTTGGCCTTCACGTTTTCAATGGTGTCACTGGGCTC 85941 Query 34931 AACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACAAAGATCTGCAT 34981 ||| || | ||| ||||| || || || || |||||||| ||||||||||| Sbjct 85942 AACTTCAAGGGTGATGGTCTTGCCAGTCAGGGTCTTCACGAAGATCTGCAT 85992 Score = 95.1 bits (104), Expect = 8e-15 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 34755 CCTCCCCTCAACCTCAAAACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAA 34814 || || |||| | || |||| ||| | ||| || ||||| ||||| ||||| || Sbjct 86222 CCACCTCTCAGACGCAGCACCAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAC 86281 Query 34815 AGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGC 34874 ||| | || |||| |||||||| || || || || || || | ||||| || | || Sbjct 86282 AGGGTGCGCCCATCTTCCAGCTGCTTGCCAGCGAAGATCAGCCTCTGCTGATCGGGAGGA 86341 Query 34875 ACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAACA 34934 | || || ||||| ||||| || ||| | | || | |||| || ||| || Sbjct 86342 ATGCCTTCTTTGTCTTGGATCTTGGCCTTTACGTTTTCAATGGTGTCACTGGGCTCGACC 86401 Query 34935 TCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACAAAGATCTGCAT 34981 |||| || ||||| || || || || |||||||||||||||||||| Sbjct 86402 TCGAGCGTGATGGTCTTGCCAGTCAGGGTCTTCACAAAGATCTGCAT 86448 Score = 91.5 bits (100), Expect = 1e-13 Identities = 158/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 34755 CCTCCCCTCAACCTCAAAACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAA 34814 |||||||||| | || |||| ||| | ||| ||||||||| ||||| ||||| || Sbjct 86450 CCTCCCCTCAGACGCAGCACCAGGTGCAGGGTGGATTCTTTCTGGATGTTGTAGTCAGAC 86509 Query 34815 AGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGC 34874 ||| | || | || |||||||| || || || || || || | ||||| || | || Sbjct 86510 AGGGTGCGCCCGTCTTCCAGCTGCTTACCAGCGAAGATCAGCCTCTGCTGATCGGGAGGA 86569 Query 34875 ACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAACA 34934 | || || ||||| ||||| || || |||| | || | | ||| || Sbjct 86570 ATGCCTTCTTTGTCTTGGATCTTGGCCTTCACATTCTCTATGGTGTCGCTAGGCTCGACC 86629 Query 34935 TCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACAAAGATCTGCATATT 34984 || | || ||||| || || || || |||||||||||||||||||| || Sbjct 86630 TCAAGAGTGATGGTCTTGCCAGTCAGGGTCTTCACAAAGATCTGCATGTT 86679 Score = 86.0 bits (94), Expect = 4e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 34755 CCTCCCCTCAACCTCAAAACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAA 34814 |||||||||| | || |||| ||| | ||| ||||||||| ||||| ||||| || Sbjct 85994 CCTCCCCTCAGACGCAGCACCAGGTGCAGGGTGGATTCTTTCTGGATGTTGTAGTCGGAC 86053 Query 34815 AGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGC 34874 ||| | || | || |||||||| || || ||||| || || | ||||| || | || Sbjct 86054 AGGGTGCGCCCGTCTTCCAGCTGCTTACCAGCAAAGATCAGCCTCTGCTGATCGGGAGGA 86113 Query 34875 ACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAACA 34934 | || || ||||| ||||| || || |||| | |||| || ||| || Sbjct 86114 ATGCCTTCTTTGTCTTGGATCTTGGCCTTCACATTCTCTATGGTGTCACTGGGCTCGACC 86173 Query 34935 TCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACAAAGATCTGCAT 34981 || | || || || || || || | || ||||| ||||||||||| Sbjct 86174 TCAAGAGTGATTGTCTTGCCAGTCAAGGTTTTCACGAAGATCTGCAT 86220 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 324497885097456