Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Callipepla_20squamata_20[genbank_20GCA_5F002218305.1_202017-07-13] 34,302 sequences; 1,045,281,893 total letters Query= NC_016072.1 Length=1259197 Score E Sequences producing significant alignments: (Bits) Value seq82 111 1e-18 seq371 105 5e-17 >seq82 Length=2126464 Score = 111 bits (122), Expect = 1e-18 Identities = 108/139 (78%), Gaps = 0/139 (0%) Strand=Plus/Minus Query 550398 ATGCAGTAATAACTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTACTAAAGATG 550457 |||| ||| | ||||||||||| |||||||| ||||| || || || || || ||||||| Sbjct 1120977 ATGCTGTAGTCACTGTACCAGCCTATTTTAACGACTCCCAGCGGCAGGCCACAAAAGATG 1120918 Query 550458 CTGGACGTATTGCTGGACTTAATGTTCTTCGTATTATCAATGAACCTACTGCTGCTGCAC 550517 ||||| ||||| || || ||||| || || |||||||| || || || |||||||| Sbjct 1120917 CTGGAACCATTGCAGGGCTGAATGTACTGCGGATTATCAACGAGCCAACAGCTGCTGCTA 1120858 Query 550518 TTGCATATGGACTTGATAA 550536 | || ||||| || || || Sbjct 1120857 TAGCCTATGGTCTGGACAA 1120839 >seq371 Length=876940 Score = 105 bits (116), Expect = 5e-17 Identities = 355/547 (65%), Gaps = 13/547 (2%) Strand=Plus/Minus Query 549992 GCTATAGGTATAGATTTAGGAACCACATATAGTTGTGTTGGTGTTTGGCAAAATGGTAAA 550051 || || || || ||| | || ||||| ||| ||| || ||||| | || | || ||| Sbjct 728355 GCCATCGGCATCGATCTGGGCACCACGTATTCTTGCGTGGGTGTCTTCCAGCACGGCAAA 728296 Query 550052 GTTGAAATTATTGCCAATGATCAAGGTAACAGAACTACTCCATCTTATGTTTCTTTCACG 550111 || || || || ||||| || || || ||| | || || || ||||| ||||||| Sbjct 728295 GTGGAGATCATCGCCAACGACCAGGGAAACCGCACCACGCCCAGCTATGTGGCTTTCACC 728236 Query 550112 GAAACTGAACATTTAGTTGGTGATGCAGCAAAATATCAAGCCACTGGTAATCCTACCAAT 550171 || || || | | |||| ||||| || || | |||| | || || ||||| Sbjct 728235 GATACGGAGCGCCTCATTGGGGATGCTGCCAAGAACCAAGTGGCGATGAACCCCACCAAC 728176 Query 550172 ACTATTTTTGATGCTAAACGTTTAATTGGAAGAAGTTTTAATGATTCGACTGTTCAGGCA 550231 || || || ||||| || ||| | || || | | | | |||| | || || ||| | Sbjct 728175 ACCATCTTCGATGCCAAGCGTCTCATCGGCCGCAAGTATGATGACCCCACGGTGCAGTCG 728116 Query 550232 GATATGAAGCATTGGCCTTTCCAAATTGTTAATGTTTCTGGAAAACCTTATATTGAAG-- 550289 || |||||||||||||| |||| | || || | ||| || || | | ||| Sbjct 728115 GACATGAAGCATTGGCCCTTCCGCGTAGTGAACGAGGGTGGCAAGCCCAAGGTGCAAGTG 728056 Query 550290 --CTACTCATGAAGGATCTGTTAAACA-ATTTTCACCAGAACAAATTTCATCTATGGTTT 550346 ||| |||| | | || | || | |||||| | || || ||||| Sbjct 728055 GAGTAC-----AAGGGCGAGATGAAGACCTTCTTTCCAGAAGAGATCAGCTCCATGGTGC 728001 Query 550347 TAATGAAAATGAAACAAACAGCCAGTGCTTTTGTTGGTCAAGAAGTTAC-GGATGCAGTA 550405 | | || ||||| | | || |||| | ||| |||||| | | | | || || Sbjct 728000 TTACCAAGATGAAGGAGATCGCTGAGGCTTAT-CTGGGGAAGAAGGTGCAGAACGCTGTT 727942 Query 550406 ATAACTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTACTAAAGATGCTGGACGT 550465 || || || || || || || |||||||| || || || || || ||||||||||| Sbjct 727941 ATCACAGTGCCTGCTTACTTCAATGACTCCCAGCGCCAGGCCACCAAAGATGCTGGCACC 727882 Query 550466 ATTGCTGGACTTAATGTTCTTCGTATTATCAATGAACCTACTGCTGCTGCACTTGCATAT 550525 || |||| |||||||| | ||||||||||| || || || || ||||| |||| ||| Sbjct 727881 ATCACTGGCCTTAATGTGATGCGTATTATCAACGAGCCCACAGCAGCTGCTATTGCCTAT 727822 Query 550526 GGACTTG 550532 || |||| Sbjct 727821 GG-CTTG 727816 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 4027481955537980