Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Callipepla_20squamata_20[genbank_20GCA_5F002218305.1_202017-07-13] 34,302 sequences; 1,045,281,893 total letters Query= NC_019491.1 Length=291144 Score E Sequences producing significant alignments: (Bits) Value seq648 127 4e-24 seq760 111 3e-19 seq1256 93.3 8e-14 seq98 93.3 8e-14 seq184 91.5 3e-13 >seq648 Length=473587 Score = 127 bits (140), Expect = 4e-24 Identities = 156/213 (73%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 241415 AGGACCTCCTGTTTGAGTTGGGCCACCTGGTCCCGCAGAACGGACGCGGTATTGGACAGT 241474 || |||| ||| ||||| ||||||||||| || || || | | ||||| || ||| Sbjct 329848 AGCACCTTCTGCTTGAGCTGGGCCACCTGCTCGCGGAGCAGGCTGGCGGTGGAGGCCAGC 329789 Query 241475 CCTGCGTTGTCAGACTTGAGCACCTTCACTTTCTCCTCCAGCCGCGCGATGCGTTCCAGT 241534 | | ||| | |||||| |||||| ||||||||||| || | |||||| |||||| Sbjct 329788 TCCGTGTTCTGGCTCTTGAGGCTCTTCACCTTCTCCTCCAGGCGGGAGATGCGCTCCAGT 329729 Query 241535 TTGCGCCGGCGGCATTTGGTGGCTGCCAAGCGGTTCCGGAGTCTCTTACGTTCCGCCTTG 241594 || | ||||||||||| ||| || | |||||||| || | || || ||||| ||| Sbjct 329728 TTCCTTTTGCGGCATTTGGAGGCGGCGATGCGGTTCCTCAGCCGTTTCCGCTCCGCTTTG 329669 Query 241595 ATGCGTTCCTGGTCCTCCATGTCGATCGGAGAC 241627 ||||| ||||| ||||||||||| || ||| Sbjct 329668 ATGCGCTCCTGCGTGTCCATGTCGATGGGGGAC 329636 >seq760 Length=358133 Score = 111 bits (122), Expect = 3e-19 Identities = 108/139 (78%), Gaps = 0/139 (0%) Strand=Plus/Minus Query 241489 CTTGAGCACCTTCACTTTCTCCTCCAGCCGCGCGATGCGTTCCAGTTTGCGCCGGCGGCA 241548 ||| || ||||||| |||||||||||||| |||||||| ||||| || | ||||||||| Sbjct 185789 CTTCAGTGCCTTCACCTTCTCCTCCAGCCGGGCGATGCGCTCCAGCTTCCTCCGGCGGCA 185730 Query 241549 TTTGGTGGCTGCCAAGCGGTTCCGGAGTCTCTTACGTTCCGCCTTGATGCGTTCCTGGTC 241608 |||| ||| || | |||||||| || | ||| || |||||||| | ||| ||||| Sbjct 185729 CTTGGAGGCCGCGATACGGTTCCGAAGCCGCTTGCGCTCCGCCTTCAGGCGCTCCTGACT 185670 Query 241609 CTCCATGTCGATCGGAGAC 241627 ||||| || | ||| ||| Sbjct 185669 CTCCACATCCAGCGGTGAC 185651 >seq1256 Length=67100 Score = 93.3 bits (102), Expect = 8e-14 Identities = 117/161 (73%), Gaps = 0/161 (0%) Strand=Plus/Plus Query 213528 GTGTACTCCATGATCTCGGTGCACAGGTTGCTGCATCGGATGGTGCCCAGGTTCTGGTGG 213587 || ||||||| ||||| |||||||| ||||||||| |||||| ||||||||||| || Sbjct 29729 GTATACTCCACTATCTCTGTGCACAGATTGCTGCATTTGATGGTCCCCAGGTTCTGCTGA 29788 Query 213588 TTTGACTTTGCGTTGGCAGAATCCTTGTAGAGCATGTAGGGGGACCCGGTCTCTAGCTGG 213647 || ||| |||| ||| || ||||| |||||||| || | || ||||| ||| Sbjct 29789 TTGCTCTTCCTGTTGCAAGAGTCTTTGTACAGCATGTAAGGCGTGCCAGTCTCCGTCTGC 29848 Query 213648 GACACCAGTATCTGGCTCCAGAGGTACCTGGCCTTGACCAC 213688 ||| | | || | |||||| | | |||||| ||||| Sbjct 29849 GACTCGATGATGGCGTACCAGAGCTGCTGGGCCTTCACCAC 29889 Score = 93.3 bits (102), Expect = 8e-14 Identities = 111/151 (74%), Gaps = 0/151 (0%) Strand=Plus/Plus Query 213813 ACTCTCTGCATGAACAGGTCCGGGACCCACAGCGCGGTGAACAGGTCCCTGGTCCTCCTC 213872 ||||||| ||| || || || || | ||| || || ||| ||||| |||| | | | Sbjct 31004 ACTCTCTTCATAAAGAGATCAGGAATCCAGAGAGCAAAGAAAAGGTCTCTGGCACGCTGC 31063 Query 213873 TCGTCCACTCCAGAGTTTTTGCGCAGATCTAGAAAGTCAAAGATGTCCGCGTGCCACGGC 213932 || ||| |||| ||| || | || ||||| || ||||||||| |||||||||| Sbjct 31064 TCCTCCTTCCCAGTGTTCTTCTTTAAGTCCAGAAACTCGAAGATGTCCAGGTGCCACGGC 31123 Query 213933 TCCATGTAGATGGCAAAGGCGCCCGGCCTCT 213963 |||| |||||||||||| || || ||||||| Sbjct 31124 TCCAGGTAGATGGCAAAAGCCCCAGGCCTCT 31154 >seq98 Length=1941566 Score = 93.3 bits (102), Expect = 8e-14 Identities = 69/81 (85%), Gaps = 0/81 (0%) Strand=Plus/Plus Query 38965 GCTCCCACCTGTTGGCGGAGAAGAGCAGGTGGACTGCGTGGTCGTCCAGCTCCGTCTTAC 39024 ||||||| | |||||||||||| |||||||| || |||||||| ||||||||| ||| | Sbjct 52330 GCTCCCAGCGGTTGGCGGAGAACAGCAGGTGCACGGCGTGGTCCTCCAGCTCCCTCTCCC 52389 Query 39025 TCTCCAGGTACGAGCTGATCA 39045 || ||||||| | |||||||| Sbjct 52390 TCGCCAGGTAGGCGCTGATCA 52410 >seq184 Length=1437213 Score = 91.5 bits (100), Expect = 3e-13 Identities = 86/110 (78%), Gaps = 0/110 (0%) Strand=Plus/Minus Query 48164 CTGATGAGCACGTTGGAGAAGCAGAGACCAGGCATGACCCCCCTCTGTTTGAGCCAGAAA 48223 |||||||| | || ||||| ||| |||||||| | || || | || ||||||||| Sbjct 73998 CTGATGAGTTCATTAGAGAAAGTGAGTCCAGGCATTAAACCTCTTTTCTTCAGCCAGAAA 73939 Query 48224 ATTGCCGCGAAAGAGCCAGAGAAGAAGATGCCCTCCACTGCCGCGAACGC 48273 |||| || ||||||||||| ||||||||||| |||||||| || || || Sbjct 73938 ATTGATGCAAAAGAGCCAGAAAAGAAGATGCCTTCCACTGCTGCAAATGC 73889 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 931133382023680