Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Callipepla_20squamata_20[genbank_20GCA_5F002218305.1_202017-07-13] 34,302 sequences; 1,045,281,893 total letters Query= NC_019495.1 Length=290304 Score E Sequences producing significant alignments: (Bits) Value seq1256 93.3 8e-14 >seq1256 Length=67100 Score = 93.3 bits (102), Expect = 8e-14 Identities = 98/129 (76%), Gaps = 0/129 (0%) Strand=Plus/Plus Query 221732 ACCTCGTCCTTGTTGGTATACTGTATGATCTCTGTACAGAGGTTGCTGCACTTGATGGTC 221791 |||||||| ||| ||||||||| | |||||||| || || |||||||| ||||||||| Sbjct 29714 ACCTCGTCTTTGCTGGTATACTCCACTATCTCTGTGCACAGATTGCTGCATTTGATGGTC 29773 Query 221792 CCCAGGTGATTGTGATTAGACTTGCGATTGGCAGCGTCCTTGTAGAGCATAAAGGGACCG 221851 ||||||| | ||||| ||| | ||| || ||| ||||| ||||| | || | Sbjct 29774 CCCAGGTTCTGCTGATTGCTCTTCCTGTTGCAAGAGTCTTTGTACAGCATGTAAGGCGTG 29833 Query 221852 CCAGTCTCC 221860 ||||||||| Sbjct 29834 CCAGTCTCC 29842 Score = 93.3 bits (102), Expect = 8e-14 Identities = 116/159 (73%), Gaps = 0/159 (0%) Strand=Plus/Plus Query 222019 CTTGTTGTCTTTGACCCTCTGCATGAAGAGGTCCGGGATCCACAGCGCCTGAAAGAGATC 222078 || |||| || || |||| ||| ||||| || || ||||| || || || || || Sbjct 30991 CTGGTTGGTTTCAACTCTCTTCATAAAGAGATCAGGAATCCAGAGAGCAAAGAAAAGGTC 31050 Query 222079 TCTGGTCCGCTGCTCCTCCACGCCGTTGTTTTTCCTCAGATCCAAAAACTCAAAAATGTC 222138 ||||| |||||||||||| || |||| ||| | | |||| |||||| || ||||| Sbjct 31051 TCTGGCACGCTGCTCCTCCTTCCCAGTGTTCTTCTTTAAGTCCAGAAACTCGAAGATGTC 31110 Query 222139 AGCGTGCCACGGCTCCAGATAGACGGCCAGAGCGCCGGG 222177 ||||||||||||||| |||| ||| | ||| || || Sbjct 31111 CAGGTGCCACGGCTCCAGGTAGATGGCAAAAGCCCCAGG 31149 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 928446534570880