Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Callipepla_20squamata_20[genbank_20GCA_5F002218305.1_202017-07-13] 34,302 sequences; 1,045,281,893 total letters Query= NC_020104.1 Length=1021348 Score E Sequences producing significant alignments: (Bits) Value seq436 91.5 1e-12 >seq436 Length=767639 Score = 91.5 bits (100), Expect = 1e-12 Identities = 86/110 (78%), Gaps = 0/110 (0%) Strand=Plus/Plus Query 627769 CCATCACGTCCTGCTCTACCTATTTCTTGATAATAACCTTCGATATTTTTAGGTGCGCCA 627828 |||||||| || ||||| ||||||||||||||||| ||| || | ||||| || ||| Sbjct 625785 CCATCACGACCAGCTCTTCCTATTTCTTGATAATAGGATTCCATTTCCTTAGGGGCACCA 625844 Query 627829 TAATGTATTACTGCTCTCACATCTGATTTATTAATACCCATTCCAAATGC 627878 ||||| || || | | ||||| |||||| || |||||||||||||| Sbjct 625845 TAATGAATAACCATCCGGATATCTGCTTTATTGATGCCCATTCCAAATGC 625894 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3266707820786696