Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Callipepla_20squamata_20[genbank_20GCA_5F002218305.1_202017-07-13] 34,302 sequences; 1,045,281,893 total letters Query= NC_020474.2 Length=180421 Score E Sequences producing significant alignments: (Bits) Value seq583 268 1e-66 seq476 226 3e-54 >seq583 Length=556070 Score = 268 bits (296), Expect = 1e-66 Identities = 657/991 (66%), Gaps = 9/991 (1%) Strand=Plus/Minus Query 160045 TGTGTCGCAGATGTTCGTCCAGACATTGGACGGCGAACACGTCAACGTCTTCGTCGAATT 160104 ||||||||| || ||| |||| ||||| || || || |||||| || ||||| | Sbjct 332057 TGTGTCGCAAATATTCTTCCAAACATTTCACTGCAAAAGGGTCAACATCAGTATCGAACT 331998 Query 160105 TATTTGCGAACAGATGGTGAGCGTTCTGTAGGATCCAGTGCACGTCTCCGGACCCGAACA 160164 |||| || || | ||||| ||| | | |||||| || |||||| ||| |||| Sbjct 331997 TATTAGCAAAGAAGTGGTG---GTTTCGCACCATCCAGCTCAGGTCTCCTACCCCAAACA 331941 Query 160165 CGCAGACGGAACGTATGTGCACGCCGTTGCAAGGCGGGTACAGAGCTCCTTTCGCCACGT 160224 ||||||| || || | || || || |||| || ||||| | || ||||| | ||||| Sbjct 331940 CGCAGACAGAGCGAACATGAACTCCACTGCACGGTGGGTAGGGCGCACCTTTAGACACGT 331881 Query 160225 CACCTTCGTAGTACTGCCACTTCACAAACCTGGCTATCGCCTGCATGTCGGAGGTGTCGT 160284 | ||||| ||||||||||||| ||||||||||| | || | ||| || || ||| | Sbjct 331880 CTCCTTCAAAGTACTGCCACTTGACAAACCTGGCCAGAGCATTCATATCAGAAACGTCAT 331821 Query 160285 ATTTGTACATCAG-GGGAACGGCACCGGGAACGCCGGGCATACGCTGTAGGGTGGCCCAC 160343 | |||| || || | ||| ||||| || || |||| || | ||| | || |||||| Sbjct 331820 ACTTGT-CACTAGAAGAAACAGCACCCGGGACATCGGGGATTCTCTGAATTGTTGCCCAC 331762 Query 160344 AGGTGTTCGTCGGGGCTGTACGTGTCCTTAGACCATTCCATGAACTCTCCGATTAACCTG 160403 |||| || || |||||||| ||||| || | ||| || ||||| | |||| ||| Sbjct 331761 AGGTACTCATCAGGGCTGTAAGTGTCTTTTGCCCACTCAATGAATTTGAGGATTTTGCTG 331702 Query 160404 TCCCGCAGAACGTGAGTAACGTAGGATCTGGTCACGACAAAGTACGCGCTGCCGGAGAAT 160463 | || |||| || | |||| | || ||||| || || || || || || Sbjct 331701 TTTTCCAATACGTACTCTACAAATCTTCTGCTAACTACAAAATAGGCACTACCAGAAAAA 331642 Query 160464 ATCG--GTATGGGTATAGGCGGCGTGTCTTTGTCCTGACCGGTGTTAGACACCACTCCTT 160521 || | |||| | | ||| || | ||||| ||| ||||| ||| || | Sbjct 331641 ATAGGAGTATTG--AGAGGTGGTAGTTGCTTGTCTATACCTGTGTTTTTCACTTTACCGT 331584 Query 160522 TCACCAGCGCGTGTCGCTTCTTCCACCTGACCATCTTGTGCGGTGGCATGCGTTCCGTCT 160581 | | | | | || |||||||| || || | ||||| ||| || | Sbjct 331583 CAATAATTTCATAGTGTTTTTTCCACCTTACTTCTTTATAAACAGGCATTTTTTCTGTTT 331524 Query 160582 CTAGACTGTTGGCACCGTCGAGCGATTTCAGCTGCTTGACGATCTCTAGGTTCGTCTTGA 160641 | | ||||| |||| | || | ||||| | || || || || |||| ||||| | Sbjct 331523 CCAAGCTGTTTTCACCTTTAAGGGCTTTCAATTTCTCTACTATTTCCTGGTTGGTCTTTA 331464 Query 160642 GCGGAAAGTCGGTACCGCACAAGTTTATCACGTACTTCCATTTCGCGCTCAGGTCGTGCA 160701 ||||| || | || || | |||||| | |||||||| || | || || | Sbjct 331463 TAGGAAAATCCATGCCACAGAGGTTTATTAGATACTTCCAGTTTGAACTTCTTCTGTAGA 331404 Query 160702 GGTCCCTCATGCAATTAATATCTGCCTGCACGCGGCTCCAGGAAGCGTACACTACGTTCT 160761 | || ||||||||||||||||||| ||||| |||||||| || || ||||| || ||| Sbjct 331403 GATCTTTCATGCAATTAATATCTGCTTGCACCCGGCTCCACGAGGCATACACAACACTCT 331344 Query 160762 CTAGTTTACTGGCCACAAAGACGTTATCGAAACACGACACGATTCCCACCACCGCCAGAA 160821 ||| | |||| | |||||| ||||| ||||| || || ||||| ||| || || Sbjct 331343 CTAACTGGCTGGATATAAAGACATTATCAAAACATGAGACTATTCCTTTCACAGCTGTAA 331284 Query 160822 AGAACATCTTATCCGCCTTTCGGTCCACGTGCACGCAATACAGGTTCTGAGGCGCGTAGA 160881 | || || | ||||| ||| || || | ||| || | |||||||| ||||||| Sbjct 331283 AAAAAGACTCTGGAGACTTTCTGTCAACATGGATGCAGTAAAAATTCTGAGGAGCGTAGA 331224 Query 160882 TGGCCCTGAGCAACCTCTCGAACATCTCTATCTTATGATGGATCACGATAGAGTAGGCTA 160941 ||| || || | || || |||||||| || || |||| | ||| || ||||| || | Sbjct 331223 TGGATCTCAGAAGTCTGTCCAACATCTCAATTTTGTGATACACCACTATTGAGTAAGCAA 331164 Query 160942 TCGGAAACTCGGTCTCCTCGCGACTCAGGGACCCGGTCAGGTACTTTCGCGTCTTGATAA 161001 | ||||| || | || || || || | | | | ||| || | | ||||| | | Sbjct 331163 TAGGAAATTCTGCTTCTTCATTGCTGAGAGGTTCCATAATGTATTTCCTCATCTTGGTGA 331104 Query 161002 AATAATCACAATCCCGCGTCATGTTGATATA 161032 || | |||| || |||||||| ||||| Sbjct 331103 AAGAGGCACAGTCTGTTGTCATGTTAATATA 331073 >seq476 Length=696916 Score = 226 bits (250), Expect = 3e-54 Identities = 616/935 (66%), Gaps = 30/935 (3%) Strand=Plus/Plus Query 160038 AGCGATCTGTGTCGCAGATGTTCGTCCAGACATTGGACGGCGAACACGTCAACGTCTTCG 160097 |||| | |||| ||||| || | || || || ||||||||| |||| || || || Sbjct 619461 AGCGCTTTGTGCCGCAGGTGCTGCTCGAGGCACTGGACGGCGGCGTCGTCCACTTCGGCG 619520 Query 160098 TCGAATTTATTTGCGAACAGATGGTGAGCGTTCTGTAGGATCCAGTGCACGTCTCCGGAC 160157 ||||| || || || || || ||||| | | | || |||||| |||||| |||| | Sbjct 619521 TCGAACTTGTTGGCCAAGAGGTGGTGC---TGCCGCAGCATCCAGGCCACGTCCCCGGCC 619577 Query 160158 CCGAACACGCAGACGGAACGTATGTGCACGCCGTTGCAAGGCGGGTACAGAGCTCCTTTC 160217 ||| |||||||||||| || | |||| |||| |||||||| | ||||| | Sbjct 619578 CCGTACACGCAGACGGCGCGCTGGAAGCGGCCGGTGCAGGGCGGGTAGGGCGCTCCG--C 619635 Query 160218 GCCACGT--CACCTTCGTAGTACTGCCACTTCACAAACCTGGCTATCGCCTGCATGTCGG 160275 | | ||| | || || |||||||||||| || | | || | ||| | |||||||| Sbjct 619636 GGCTCGTGTCGCCGTCCAGGTACTGCCACTTGACCAGGCGGGGCAGCGCGTTCATGTCGG 619695 Query 160276 AGGTGTCGTATTTGTACATCAGGGGAACGGCACCGGGAACGCCGGGCATACGCTGTAGGG 160335 | | | | |||| | |||| ||||| ||||| ||||||||| || | || | Sbjct 619696 ACAGCTGGAACTTGTCGTTGTGGGGCACGGCGCCGGGCACGCCGGGCGCGCGGTTCAGCG 619755 Query 160336 TGGCCCACAGGTGTTCGTCGGGGCTGTACGTGTCCTTAGACCATTCCATGAACTCTCCGA 160395 ||||||||| ||| |||||||||||||| |||||||| | ||| || | ||| ||| Sbjct 619756 TGGCCCACACGTGCTCGTCGGGGCTGTAGGTGTCCTTGGCCCACTCGAGGAA----CCGC 619811 Query 160396 TTAACC----TGTCCCGCAGAACGTGAGTAACGTAGGATCTGGTCACGACAAAGTACGCG 160451 | || |||| ||| ||||| ||| ||| | || | | | ||| ||| Sbjct 619812 TGCGCCGTGGGGTCCTCCAGCACGTGCCGCACGAAGGCCCGCGTGGCCGCGATGTAGGCG 619871 Query 160452 CTGCCGGAGAATATCGGTATGGGTATAGGCGG-CGTGTCTTTGTCCTGACCG-GTGTTAG 160509 ||||| | ||| || || | | | || || | | ||| | | || ||| | | || Sbjct 619872 CTGCCCGTGAACATGGGCGAGCGGAGCGGAGGAGGCGGCTTCGCCGTGGCCGTGCGCGAG 619931 Query 160510 ACACCACTCCTTTCACCAGCGCGTGTCGCTTCTTCCACCTGACCATCTTGTGCGGTGGCA 160569 | ||| || ||| ||| | | |||||| | || ||||| || | | Sbjct 619932 A-TGAACTGCT----CCACTCGGTGGTGGTACTTCCAGCGCTCCTGCTTGTACGCCGTCG 619986 Query 160570 TGCGTTCCGTCTCTAGACTGTTGGCACCGTCGAGCGATTTCAGCTGCTTGACGATCTCTA 160629 | || | ||| | ||||| || | ||| | |||| ||| ||||| Sbjct 619987 GCCTCTCGGACTCCATGCTGTTCTGCCCCTGCAGCACCTGCAGCGCGCGGACCATCTCCG 620046 Query 160630 GGTTCGTCTTGAGCGGAAAGTCGGTACCGCACAAGTTTATCACGTACTTCCATTTCGCGC 160689 ||| ||||||| || ||||| || |||||| ||| | |||||| ||| | || Sbjct 620047 CGTTGGTCTTGATGGGGAAGTCCGTGCCGCACGTGTTGAGCACGTAGCGCCA----GGGC 620102 Query 160690 TCAGGTC----GTGCAGGTCCCTCATGCAATTAATATCTGCCTGCACGCGGCTCCAGGAA 160745 | || | ||||||||| |||||| || | || ||||||| ||| ||| || Sbjct 620103 ACGGGGCTGCGCAGCAGGTCCCGCATGCAGTTGAGGTCGGCCTGCAGCCGGGACCACGAG 620162 Query 160746 GCGTACACTACGTTCTCTAGTTTACTGGCCACAAAGACGTTATCGAAACACGACACGATT 160805 |||||||| ||| |||| || |||||||| |||||||| ||| || | |||| Sbjct 620163 GCGTACACCACGCTCTCCAGGCGGCTGGCCACGAAGACGTTGGGGAAGCAGGCGGCGATG 620222 Query 160806 CCCACCACCGCCAGAAAGAACATCTTATCCGCCTTTCGGTCCACGTGCACGCAATACAGG 160865 || ||| ||| | ||| ||||| ||||||||| ||||| || | | Sbjct 620223 GCCCGCACGGCCTGCTGGAAGGCGGCGGGAGCCTTGGCGTCCACGTGGACGCAGTAGACG 620282 Query 160866 TTCTGAGGCGCGTAGATGGCCCTGAGCAACCTCTCGAACATCTCTATCTTATGATGGATC 160925 ||||| || ||||||| || | || | || |||||||||||| ||||| || |||||| Sbjct 620283 TTCTGCGGGGCGTAGACGGAGCGCAGGAGCCGCTCGAACATCTCGATCTTGTGGTGGATC 620342 Query 160926 ACGATAGAGTAGGCTATCGGAAACTCGGTCTCCTC 160960 || || |||||||| || || || ||| |||||| Sbjct 620343 ACCATGGAGTAGGCGATGGGGAAGCCGGCCTCCTC 620377 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 576971702837520