Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Callipepla_20squamata_20[genbank_20GCA_5F002218305.1_202017-07-13] 34,302 sequences; 1,045,281,893 total letters Query= NC_020852.1 Length=186468 Score E Sequences producing significant alignments: (Bits) Value seq1256 82.4 9e-11 >seq1256 Length=67100 Score = 82.4 bits (90), Expect = 9e-11 Identities = 102/140 (73%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 75878 TGGAAGGCTATTCTCAAATCACAGACGGAGACTGGAACACCATATATGCTTTACAAGGAT 75937 ||| | || || || | || |||||||||||||| || || || ||||| ||||| || Sbjct 29868 TGGTACGCCATCATCGAGTCGCAGACGGAGACTGGCACGCCTTACATGCTGTACAAAGAC 29809 Query 75938 GCTTGTAACAAGAAGAGTAACCAAAAGAATTTGGGAACAATCAAGAGCTCAAATCTTTGC 75997 |||| |||| |||||| || || |||| |||| || ||||| || ||||| ||| Sbjct 29808 TCTTGCAACAGGAAGAGCAATCAGCAGAACCTGGGGACCATCAAATGCAGCAATCTGTGC 29749 Query 75998 ACGGAAATTTTAGAGTACAC 76017 || || || | ||||| || Sbjct 29748 ACAGAGATAGTGGAGTATAC 29729 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 596313805869760