Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Callipepla_20squamata_20[genbank_20GCA_5F002218305.1_202017-07-13] 34,302 sequences; 1,045,281,893 total letters Query= NC_021249.1 Length=282895 Score E Sequences producing significant alignments: (Bits) Value seq184 84.2 4e-11 >seq184 Length=1437213 Score = 84.2 bits (92), Expect = 4e-11 Identities = 81/104 (78%), Gaps = 0/104 (0%) Strand=Plus/Minus Query 39167 TTCATTACTAAAAGTTAATCCTGGCATTAATCCTCTCTTTTTAAGCCAAAATATTGATGC 39226 ||||||| ||||| | ||| |||||||| ||||| || || ||||| || |||||||| Sbjct 73990 TTCATTAGAGAAAGTGAGTCCAGGCATTAAACCTCTTTTCTTCAGCCAGAAAATTGATGC 73931 Query 39227 AAAACTACTAGAAAAGAATATACCCTCCACACACGCAAATGCTA 39270 |||| | ||||||||| || || ||||| |||||||||| Sbjct 73930 AAAAGAGCCAGAAAAGAAGATGCCTTCCACTGCTGCAAATGCTA 73887 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 904747900311600