Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Callipepla_20squamata_20[genbank_20GCA_5F002218305.1_202017-07-13] 34,302 sequences; 1,045,281,893 total letters Query= NC_023177.1 Length=124688 Score E Sequences producing significant alignments: (Bits) Value seq448 91.5 1e-13 >seq448 Length=747048 Score = 91.5 bits (100), Expect = 1e-13 Identities = 148/213 (69%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGGCTGGC 107615 ||||| || || || || || || || || |||||||| ||| | || |||| | | Sbjct 684582 ATGCAGATCTTCGTGAAGACCTTGACTGGTAAAACCATCACCTTGGAGGTGGAGCCCAGT 684641 Query 107616 GATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCAG 107675 ||||| ||| | || || ||||| || || |||||| | ||| |||||| Sbjct 684642 GATACCATCGAGAACGTCAAGGCCAAGATCCAGGACAAGGAAGGCATCCCCCCCGATCAG 684701 Query 107676 CAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAAC 107735 ||||| || |||| ||| || || |||||||| || | || || | ||||||||| Sbjct 684702 CAGAGGCTGATTTTTGCTGGCAAGCAGCTGGAAGATGGGCGCACCCTGTCCGACTACAAC 684761 Query 107736 ATTCAAAAGGAGTCTACGTTGCACATGGTGTTG 107768 || || |||||||| || ||||| ||||| || Sbjct 684762 ATCCAGAAGGAGTCCACCCTGCACCTGGTGCTG 684794 Score = 82.4 bits (90), Expect = 6e-11 Identities = 140/203 (69%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGGCTGGC 107615 ||||| || ||||| || || | || || |||||||| ||| | || |||| | | Sbjct 684354 ATGCAGATCTTTGTGAAGACCCTGACTGGTAAAACCATCACCTTGGAGGTGGAGCCCAGT 684413 Query 107616 GATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCAG 107675 || || ||| | || || ||||| || || |||||| | ||| |||||| Sbjct 684414 GACACCATCGAGAACGTCAAGGCCAAGATCCAGGACAAGGAAGGCATCCCCCCCGATCAG 684473 Query 107676 CAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAAC 107735 ||||| || |||| ||| || || |||||||| |||| || || | ||||||||| Sbjct 684474 CAGAGGCTGATTTTTGCTGGCAAGCAGCTGGAAGACGGGCGCACCCTGTCCGACTACAAC 684533 Query 107736 ATTCAAAAGGAGTCTACGTTGCA 107758 || || |||||||| || |||| Sbjct 684534 ATCCAGAAGGAGTCCACCCTGCA 684556 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 398710047310078