Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Callipepla_20squamata_20[genbank_20GCA_5F002218305.1_202017-07-13] 34,302 sequences; 1,045,281,893 total letters Query= NC_023639.1 Length=1168989 Score E Sequences producing significant alignments: (Bits) Value seq82 104 2e-16 seq436 96.9 3e-14 >seq82 Length=2126464 Score = 104 bits (114), Expect = 2e-16 Identities = 108/142 (76%), Gaps = 0/142 (0%) Strand=Plus/Plus Query 282332 TTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAAAACA 282391 || || || |||||||| || | ||||||||| ||||| || || ||||| | || ||| Sbjct 1120836 TTCTTGTCCAGACCATAGGCTATAGCAGCAGCTGTTGGCTCGTTGATAATCCGCAGTACA 1120895 Query 282392 TTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAATAT 282451 || || || ||||| |||| |||||||| ||||| || | || || ||||||||||| Sbjct 1120896 TTCAGCCCTGCAATGGTTCCAGCATCTTTTGTGGCCTGCCGCTGGGAGTCGTTAAAATAG 1120955 Query 282452 GCAGGAACAGTAATAACGGCAT 282473 || || ||||| | || |||| Sbjct 1120956 GCTGGTACAGTGACTACAGCAT 1120977 >seq436 Length=767639 Score = 96.9 bits (106), Expect = 3e-14 Identities = 97/126 (77%), Gaps = 0/126 (0%) Strand=Plus/Minus Query 131176 TGTAGTAGCCACAATAGCATTTGGTATGGGTATTAATAAACCGGATGTTAGAGTTGTTAT 131235 ||| ||||| || | |||||||| ||||| || |||||| | ||| | | | ||||| Sbjct 625910 TGTTGTAGCTACGGTGGCATTTGGAATGGGCATCAATAAAGCAGATATCCGGATGGTTAT 625851 Query 131236 TCATTACGGAGCTCCCAAGAATATTGAAGGTTATTATCAAGAAATTGGTAGAGCAGGTCG 131295 |||||| || || || ||| | || ||| |||||||||||||| || ||||| ||||| Sbjct 625850 TCATTATGGTGCCCCTAAGGAAATGGAATCCTATTATCAAGAAATAGGAAGAGCTGGTCG 625791 Query 131296 TGATGG 131301 |||||| Sbjct 625790 TGATGG 625785 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3738946316760252