Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Callipepla_20squamata_20[genbank_20GCA_5F002218305.1_202017-07-13] 34,302 sequences; 1,045,281,893 total letters Query= NC_024303.1 Length=144898 Score E Sequences producing significant alignments: (Bits) Value seq184 95.1 1e-14 >seq184 Length=1437213 Score = 95.1 bits (104), Expect = 1e-14 Identities = 125/171 (73%), Gaps = 2/171 (1%) Strand=Plus/Minus Query 21125 AGCATTTGGGGGCCTAGCTGCGATGGCTTAGATTGCATTGTTAAGCGGTGTGAACTGCCA 21184 ||||| ||||| || | || |||||| | ||| | ||||| |||| ||| | |||| Sbjct 326987 AGCATATGGGGACCAACATGTGATGGCCTCGATCGGATTGTGGAGCGCTGTAACATGCCG 326928 Query 21185 GAGCTTCAAGTGGGCGACTGGCTCATATTTGAAAACATGGGCGCTTACAGCTTGGTCAGC 21244 ||||| ||||| || |||||| | | |||||||||||||| || |||| || |||| Sbjct 326927 GAGCTGCAAGTTGGTGACTGGATGCTGTTTGAAAACATGGGTGCCTACA-CTGTCGCAGC 326869 Query 21245 -TCTTCAACCTTTAACGGCTTCCCAAAGCCAGAAAAGCACTATGTTATTTC 21294 |||| || || ||||| |||| | |||| || || |||||||| || Sbjct 326868 AGCTTCTACTTTCAACGGATTCCAGAGGCCAACAATACATTATGTTATGTC 326818 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 463346843235360