Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Callipepla_20squamata_20[genbank_20GCA_5F002218305.1_202017-07-13] 34,302 sequences; 1,045,281,893 total letters Query= NC_024696.1 Length=180800 Score E Sequences producing significant alignments: (Bits) Value seq476 131 2e-25 >seq476 Length=696916 Score = 131 bits (144), Expect = 2e-25 Identities = 266/389 (68%), Gaps = 6/389 (2%) Strand=Plus/Plus Query 162598 TCGGTCTCTAGACTGTTACGACCCCCCAAGGCCTTCAGCTGACGCACCATCTCTAGATTG 162657 |||| ||| | ||||| | ||| || ||| |||| || |||||||| ||| Sbjct 619992 TCGGACTCCATGCTGTTCTGCCCCTGCAGCACCTGCAGCGCGCGGACCATCTCCGCGTTG 620051 Query 162658 GTCTTAAGGGGAAAGTCGGTGCCGCAGAGATTAATAACATATTTCCACTTAACGCTGAGT 162717 ||||| | ||| ||||| |||||||| || | || || ||| ||| | | Sbjct 620052 GTCTTGATGGGGAAGTCCGTGCCGCACGTGTTGAGCACGTAGCGCCAGGGCACGGGGC-T 620110 Query 162718 CCGTA-CAGATCCTGTAGACAGTTCAGATCGGCCTGGACGCGACTCCACGACGCGTACAC 162776 || | ||| ||| | | ||||| || |||||||| | || |||||| |||||||| Sbjct 620111 GCGCAGCAGGTCCCGCATGCAGTTGAGGTCGGCCTGCAGCCGGGACCACGAGGCGTACAC 620170 Query 162777 GACGCTCTCCAACCTAGTGGCGACAAAGACATTGTCGAAACACGAAACTATCCCCATCAC 162836 |||||||||| | |||| || ||||| ||| ||| || | | || || ||| Sbjct 620171 CACGCTCTCCAGGCGGCTGGCCACGAAGACGTTGGGGAAGCAGGCGGCGATGGCCCGCAC 620230 Query 162837 GGCCAGTGAGAA--CATCGGGTCCGCTTTCCTATCTACGTGTACGCAGTATAGATTCTGA 162894 |||| | ||| | |||| | ||| | || ||||| |||||||| | ||||| Sbjct 620231 GGCCTGCTGGAAGGCGGCGGGAGC-CTTGGCG-TCCACGTGGACGCAGTAGACGTTCTGC 620288 Query 162895 GGGGCGTAGATGGCCCTCAGTAATCTCTCGAACATCTCTATCTTATGGTGTACCACGATA 162954 |||||||||| || | ||| | | |||||||||||| ||||| ||||| | ||| || Sbjct 620289 GGGGCGTAGACGGAGCGCAGGAGCCGCTCGAACATCTCGATCTTGTGGTGGATCACCATG 620348 Query 162955 GAATACGCTATGGGGAACTCAGCCTCCTC 162983 || || || |||||||| | |||||||| Sbjct 620349 GAGTAGGCGATGGGGAAGCCGGCCTCCTC 620377 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 578183982819200