Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Callipepla_20squamata_20[genbank_20GCA_5F002218305.1_202017-07-13] 34,302 sequences; 1,045,281,893 total letters Query= NC_026440.1 Length=2243109 Score E Sequences producing significant alignments: (Bits) Value seq1337 188 1e-41 seq1222 188 1e-41 seq102 188 1e-41 seq255 183 4e-40 SEQ29186 179 5e-39 seq1637 179 5e-39 SEQ10189 176 6e-38 seq127 104 3e-16 >seq1337 Length=46112 Score = 188 bits (208), Expect = 1e-41 Identities = 180/229 (79%), Gaps = 6/229 (3%) Strand=Plus/Plus Query 724914 TACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCCTCCAACAAGTCCATG 724973 ||||||||||| ||||||||||||||| || || |||| || |||| ||||| Sbjct 18108 TACAAGGTGCTGAAGCAGGTGCACCCCGACAC-----GGGCATC-TCGTCCAAGGCCATG 18161 Query 724974 TCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCGGTCGC 725033 |||||||||||||| ||||||||||| |||| ||||||| | |||||| ||| Sbjct 18162 GGCATCATGAACTCGTTCGTCAACGACATCTTCGAGCGCATCGCCGGCGAGGCGTCGCGC 18221 Query 725034 CTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACCGCCGTGCGC 725093 ||||||| || |||||||||| || ||| |||| ||||||||||| |||||||| Sbjct 18222 CTGGCGCACTACAACAAGCGCTCGACCATCACGTCGCGGGAGATCCAGACGGCCGTGCGG 18281 Query 725094 CTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCACCA 725142 ||| | ||| |||||| ||||||| ||||||||| ||||||||||||| Sbjct 18282 CTGCTGCTGCCCGGCGAGCTGGCCAAGCACGCCGTGTCCGAGGGCACCA 18330 Score = 188 bits (208), Expect = 1e-41 Identities = 180/229 (79%), Gaps = 6/229 (3%) Strand=Plus/Plus Query 724914 TACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCCTCCAACAAGTCCATG 724973 ||||||||||| ||||||||||||||| || || |||| || |||| ||||| Sbjct 24212 TACAAGGTGCTGAAGCAGGTGCACCCCGACAC-----GGGCATC-TCGTCCAAGGCCATG 24265 Query 724974 TCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCGGTCGC 725033 |||||||||||||| ||||||||||| |||| ||||||| | |||||| ||| Sbjct 24266 GGCATCATGAACTCGTTCGTCAACGACATCTTCGAGCGCATCGCCGGCGAGGCGTCGCGC 24325 Query 725034 CTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACCGCCGTGCGC 725093 ||||||| || |||||||||| || ||| |||| ||||||||||| |||||||| Sbjct 24326 CTGGCGCACTACAACAAGCGCTCGACCATCACGTCGCGGGAGATCCAGACGGCCGTGCGG 24385 Query 725094 CTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCACCA 725142 ||| | ||| |||||| ||||||| ||||||||| ||||||||||||| Sbjct 24386 CTGCTGCTGCCCGGCGAGCTGGCCAAGCACGCCGTGTCCGAGGGCACCA 24434 Score = 188 bits (208), Expect = 1e-41 Identities = 180/229 (79%), Gaps = 6/229 (3%) Strand=Plus/Plus Query 724914 TACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCCTCCAACAAGTCCATG 724973 ||||||||||| ||||||||||||||| || || |||| || |||| ||||| Sbjct 44492 TACAAGGTGCTGAAGCAGGTGCACCCCGACAC-----GGGCATC-TCGTCCAAGGCCATG 44545 Query 724974 TCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCGGTCGC 725033 |||||||||||||| ||||||||||| |||| ||||||| | |||||| ||| Sbjct 44546 GGCATCATGAACTCGTTCGTCAACGACATCTTCGAGCGCATCGCCGGCGAGGCGTCGCGC 44605 Query 725034 CTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACCGCCGTGCGC 725093 ||||||| || |||||||||| || ||| |||| ||||||||||| |||||||| Sbjct 44606 CTGGCGCACTACAACAAGCGCTCGACCATCACGTCGCGGGAGATCCAGACGGCCGTGCGG 44665 Query 725094 CTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCACCA 725142 ||| | ||| |||||| ||||||| ||||||||| ||||||||||||| Sbjct 44666 CTGCTGCTGCCCGGCGAGCTGGCCAAGCACGCCGTGTCCGAGGGCACCA 44714 >seq1222 Length=82599 Score = 188 bits (208), Expect = 1e-41 Identities = 180/229 (79%), Gaps = 6/229 (3%) Strand=Plus/Plus Query 724914 TACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCCTCCAACAAGTCCATG 724973 ||||||||||| ||||||||||||||| || || |||| || |||| ||||| Sbjct 710 TACAAGGTGCTGAAGCAGGTGCACCCCGACAC-----GGGCATC-TCGTCCAAGGCCATG 763 Query 724974 TCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCGGTCGC 725033 |||||||||||||| ||||||||||| |||| ||||||| | |||||| ||| Sbjct 764 GGCATCATGAACTCGTTCGTCAACGACATCTTCGAGCGCATCGCCGGCGAGGCGTCGCGC 823 Query 725034 CTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACCGCCGTGCGC 725093 ||||||| || |||||||||| || ||| |||| ||||||||||| |||||||| Sbjct 824 CTGGCGCACTACAACAAGCGCTCGACTATCACGTCGCGGGAGATCCAGACGGCCGTGCGG 883 Query 725094 CTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCACCA 725142 ||| | ||| |||||| ||||||| ||||||||| ||||||||||||| Sbjct 884 CTGCTGCTGCCCGGCGAGCTGGCCAAGCACGCCGTGTCCGAGGGCACCA 932 Score = 188 bits (208), Expect = 1e-41 Identities = 180/229 (79%), Gaps = 6/229 (3%) Strand=Plus/Minus Query 724914 TACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCCTCCAACAAGTCCATG 724973 ||||||||||| ||||||||||||||| || || |||| || |||| ||||| Sbjct 5615 TACAAGGTGCTGAAGCAGGTGCACCCCGACAC-----GGGCATC-TCGTCCAAGGCCATG 5562 Query 724974 TCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCGGTCGC 725033 |||||||||||||| ||||||||||| |||| ||||||| | |||||| ||| Sbjct 5561 GGCATCATGAACTCGTTCGTCAACGACATCTTCGAGCGCATCGCCGGCGAGGCGTCGCGC 5502 Query 725034 CTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACCGCCGTGCGC 725093 ||||||| || |||||||||| || ||| |||| ||||||||||| |||||||| Sbjct 5501 CTGGCGCACTACAACAAGCGCTCGACCATCACGTCGCGGGAGATCCAGACGGCCGTGCGG 5442 Query 725094 CTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCACCA 725142 ||| | ||| |||||| ||||||| ||||||||| ||||||||||||| Sbjct 5441 CTGCTGCTGCCCGGCGAGCTGGCCAAGCACGCCGTGTCCGAGGGCACCA 5393 >seq102 Length=1910416 Score = 188 bits (208), Expect = 1e-41 Identities = 180/229 (79%), Gaps = 6/229 (3%) Strand=Plus/Minus Query 724914 TACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCCTCCAACAAGTCCATG 724973 ||||||||||| ||||||||||||||| || || |||| || |||| ||||| Sbjct 13350 TACAAGGTGCTGAAGCAGGTGCACCCCGACAC-----GGGCATC-TCGTCCAAGGCCATG 13297 Query 724974 TCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCGGTCGC 725033 |||||||||||||| ||||||||||| |||| ||||||| | |||||| ||| Sbjct 13296 GGCATCATGAACTCGTTCGTCAACGACATCTTCGAGCGCATCGCCGGCGAGGCGTCGCGC 13237 Query 725034 CTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACCGCCGTGCGC 725093 ||||||| || |||||||||| || ||| |||| ||||||||||| |||||||| Sbjct 13236 CTGGCGCACTACAACAAGCGCTCGACCATCACGTCGCGGGAGATCCAGACGGCCGTGCGG 13177 Query 725094 CTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCACCA 725142 ||| | ||| |||||| ||||||| ||||||||| ||||||||||||| Sbjct 13176 CTGCTGCTGCCCGGCGAGCTGGCCAAGCACGCCGTGTCCGAGGGCACCA 13128 Score = 188 bits (208), Expect = 1e-41 Identities = 180/229 (79%), Gaps = 6/229 (3%) Strand=Plus/Minus Query 724914 TACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCCTCCAACAAGTCCATG 724973 ||||||||||| ||||||||||||||| || || |||| || |||| ||||| Sbjct 28201 TACAAGGTGCTGAAGCAGGTGCACCCCGACAC-----GGGCATC-TCGTCCAAGGCCATG 28148 Query 724974 TCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCGGTCGC 725033 |||||||||||||| ||||||||||| |||| ||||||| | |||||| ||| Sbjct 28147 GGCATCATGAACTCGTTCGTCAACGACATCTTCGAGCGCATCGCCGGCGAGGCGTCGCGC 28088 Query 725034 CTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACCGCCGTGCGC 725093 ||||||| || |||||||||| || ||| |||| ||||||||||| |||||||| Sbjct 28087 CTGGCGCACTACAACAAGCGCTCGACCATCACGTCGCGGGAGATCCAGACGGCCGTGCGG 28028 Query 725094 CTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCACCA 725142 ||| | ||| |||||| ||||||| ||||||||| ||||||||||||| Sbjct 28027 CTGCTGCTGCCCGGCGAGCTGGCCAAGCACGCCGTGTCCGAGGGCACCA 27979 Score = 188 bits (208), Expect = 1e-41 Identities = 180/229 (79%), Gaps = 6/229 (3%) Strand=Plus/Plus Query 724914 TACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCCTCCAACAAGTCCATG 724973 ||||||||||| ||||||||||||||| || || |||| || |||| ||||| Sbjct 48626 TACAAGGTGCTGAAGCAGGTGCACCCCGACAC-----GGGCATC-TCGTCCAAGGCCATG 48679 Query 724974 TCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCGGTCGC 725033 |||||||||||||| ||||||||||| |||| ||||||| | |||||| ||| Sbjct 48680 GGCATCATGAACTCGTTCGTCAACGACATCTTCGAGCGCATCGCCGGCGAGGCGTCGCGC 48739 Query 725034 CTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACCGCCGTGCGC 725093 ||||||| || |||||||||| || ||| |||| ||||||||||| |||||||| Sbjct 48740 CTGGCGCACTACAACAAGCGCTCGACCATCACGTCGCGGGAGATCCAGACGGCCGTGCGG 48799 Query 725094 CTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCACCA 725142 ||| | ||| |||||| ||||||| ||||||||| ||||||||||||| Sbjct 48800 CTGCTGCTGCCCGGCGAGCTGGCCAAGCACGCCGTGTCCGAGGGCACCA 48848 Score = 179 bits (198), Expect = 5e-39 Identities = 178/229 (78%), Gaps = 6/229 (3%) Strand=Plus/Plus Query 724914 TACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCCTCCAACAAGTCCATG 724973 ||||||||||| ||||||||||||||| || || |||| || || ||||| Sbjct 19507 TACAAGGTGCTGAAGCAGGTGCACCCCGACAC-----GGGCATC-TCGTCTAAAGCCATG 19560 Query 724974 TCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCGGTCGC 725033 |||||||||||||| ||||||||||| |||| ||||||| | |||||| ||| Sbjct 19561 AGCATCATGAACTCGTTCGTCAACGACATCTTCGAGCGCATCGCCGGCGAGGCGTCGCGC 19620 Query 725034 CTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACCGCCGTGCGC 725093 ||||||| || |||||||||| || ||| |||| ||||||||||| |||||||| Sbjct 19621 CTGGCGCACTACAACAAGCGCTCGACCATCACGTCGCGGGAGATCCAGACGGCCGTGCGG 19680 Query 725094 CTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCACCA 725142 ||| | ||| |||||| ||||||| ||||||||| ||||||||||||| Sbjct 19681 CTGCTGCTGCCCGGCGAGCTGGCCAAGCACGCCGTGTCCGAGGGCACCA 19729 >seq255 Length=1113340 Score = 183 bits (202), Expect = 4e-40 Identities = 180/231 (78%), Gaps = 6/231 (3%) Strand=Plus/Plus Query 724912 TCTACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCCTCCAACAAGTCCA 724971 ||||||||||||| || ||||| |||||| |||| |||| ||| |||| ||| Sbjct 455794 TCTACAAGGTGCTGAAACAGGTCCACCCCGACACCGG-----CATC-TCCTCCAAGGCCA 455847 Query 724972 TGTCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCGGTC 725031 || ||||||||||| |||||||||||||| |||| ||||||| |||||| | Sbjct 455848 TGGGCATCATGAACTCCTTTGTCAACGACATCTTCGAGCGCATCGCGGGTGAGGCCTCGC 455907 Query 725032 GCCTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACCGCCGTGC 725091 ||||||| | || ||||||||| ||| ||| | |||| |||||||| || ||||||| Sbjct 455908 GCCTGGCACACTACAACAAGCGTTCCACCATCACCTCGCGGGAGATCCAAACAGCCGTGC 455967 Query 725092 GCCTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCACCA 725142 ||||| | ||| ||| || ||||||| ||||||||||||||||||||||| Sbjct 455968 GCCTGCTGCTGCCCGGTGAGCTGGCCAAGCACGCCGTCTCCGAGGGCACCA 456018 >SEQ29186 Length=1132 Score = 179 bits (198), Expect = 5e-39 Identities = 178/229 (78%), Gaps = 6/229 (3%) Strand=Plus/Plus Query 724914 TACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCCTCCAACAAGTCCATG 724973 ||||||||||| ||||||||||||||| || || |||| || |||| ||||| Sbjct 754 TACAAGGTGCTGAAGCAGGTGCACCCCGACAC-----GGGCATC-TCGTCCAAGGCCATG 807 Query 724974 TCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCGGTCGC 725033 |||||||||||||| ||||||||||| |||| ||||| | | |||||| ||| Sbjct 808 GGCATCATGAACTCGTTCGTCAACGACATCTTCGAGCGCATAGCCGGCGAGGCGTTGCGC 867 Query 725034 CTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACCGCCGTGCGC 725093 ||||||| || |||||||||| || ||| |||| ||||||||||| |||||||| Sbjct 868 CTGGCGCACTACAACAAGCGCTCGACCATCACGTCGCGGGAGATCCAGACGGCCGTGCGG 927 Query 725094 CTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCACCA 725142 ||| | ||| |||||| ||| ||| ||||||||| ||||||||||||| Sbjct 928 CTGCTGCTGCCCGGCGAGCTGTCCAAGCACGCCGTGTCCGAGGGCACCA 976 >seq1637 Length=20838 Score = 179 bits (198), Expect = 5e-39 Identities = 178/229 (78%), Gaps = 6/229 (3%) Strand=Plus/Plus Query 724914 TACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCCTCCAACAAGTCCATG 724973 ||||||||||| ||||||||||||||| || || |||| || |||| ||||| Sbjct 5252 TACAAGGTGCTGAAGCAGGTGCACCCCGACAC-----GGGCATC-TCTTCCAAGGCCATG 5305 Query 724974 TCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCGGTCGC 725033 |||||||||||||| ||||||||||| |||| ||||||| | | |||| ||| Sbjct 5306 GGCATCATGAACTCGTTCGTCAACGACATCTTCGAGCGCATCGCCGGCAAGGCGTCGCGC 5365 Query 725034 CTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACCGCCGTGCGC 725093 ||||||| || |||||||||| || ||| |||| ||||||||||| |||||||| Sbjct 5366 CTGGCGCACTACAACAAGCGCTCGACCATCACGTCGCGGGAGATCCAGACGGCCGTGCGG 5425 Query 725094 CTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCACCA 725142 ||| | ||| | |||| ||||||| ||||||||| ||||||||||||| Sbjct 5426 CTGCTGCTGCCCAGCGAGCTGGCCAAGCACGCCGTGTCCGAGGGCACCA 5474 >SEQ10189 Length=3370 Score = 176 bits (194), Expect = 6e-38 Identities = 177/229 (77%), Gaps = 6/229 (3%) Strand=Plus/Plus Query 724914 TACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCCTCCAACAAGTCCATG 724973 ||||||||||| ||||||||||||||| || || |||| || |||| ||||| Sbjct 2793 TACAAGGTGCTGAAGCAGGTGCACCCCGACAC-----GGGCATC-TCGTCCAAGGCCATG 2846 Query 724974 TCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCGGTCGC 725033 |||||||||||||| ||||||||||| |||| ||||||| | |||||| ||| Sbjct 2847 GGCATCATGAACTCGTTCGTCAACGACATCTTCGAGCGCATCGCCGGCGAGGCGTCGCGC 2906 Query 725034 CTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACCGCCGTGCGC 725093 ||||||| || |||||||||| || ||| |||| ||||||||||| |||||||| Sbjct 2907 CTGGCGCACTACAACAAGCGCTCGACCATCACGTCGCGGGAGATCCAGACGGCCGTGCGG 2966 Query 725094 CTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCACCA 725142 ||| | ||| | |||| ||||||| | ||||||| ||| ||||||||| Sbjct 2967 CTGCTGCTGCCCAGCGAGCTGGCCAAGTACGCCGTGTCCAAGGGCACCA 3015 >seq127 Length=1740037 Score = 104 bits (114), Expect = 3e-16 Identities = 136/186 (73%), Gaps = 2/186 (1%) Strand=Plus/Minus Query 724958 CTCCAACAAGTCCATGTCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGG 725017 |||| |||| ||||| |||||||||||||||||||| ||||| | || || | || Sbjct 1441411 CTCCTCCAAGGCCATGAGCATCATGAACTCGTTTGTCAATGACATCTTTGAGCGGCT-GG 1441353 Query 725018 CACCG-AGGCCGGTCGCCTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGA 725076 ||| | ||||| |||||| ||| | |||| | | | || ||| || || ||| Sbjct 1441352 CACTGGAGGCCTCGCGCCTGACGCAGTACAACCACCACTCAACCATCACCAGTCGAGAGG 1441293 Query 725077 TCCAGACCGCCGTGCGCCTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGG 725136 | ||||| |||||||| || | ||| || || ||||||| ||| ||||| ||||||| Sbjct 1441292 TGCAGACAGCCGTGCGGCTCCTGCTGCCTGGAGAGCTGGCCAAGCATGCCGTGTCCGAGG 1441233 Query 725137 GCACCA 725142 |||||| Sbjct 1441232 GCACCA 1441227 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7174502709052924