Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Callipepla_20squamata_20[genbank_20GCA_5F002218305.1_202017-07-13] 34,302 sequences; 1,045,281,893 total letters Query= NC_026511.1 Length=140913 Score E Sequences producing significant alignments: (Bits) Value seq448 134 1e-26 seq384 129 5e-25 >seq448 Length=747048 Score = 134 bits (148), Expect = 1e-26 Identities = 145/192 (76%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 35545 CTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAA 35604 |||||| || |||||||| |||| || ||| ||| |||| ||||||||||| || ||||| Sbjct 684545 CTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGCCCGTCTTCCAGCTGCTTGCCAGCAAA 684486 Query 35605 TATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGT 35664 |||| || |||||| || | || | || ||||||||| |||||| ||| | | Sbjct 684485 AATCAGCCTCTGCTGATCGGGGGGGATGCCTTCCTTGTCCTGGATCTTGGCCTTGACGTT 684426 Query 35665 TGCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCAC 35724 | | ||||| || | |||||||||| ||||| |||||||| |||| || ||||| Sbjct 684425 CTCGATGGTGTCACTGGGCTCCACCTCCAAGGTGATGGTTTTACCAGTCAGGGTCTTCAC 684366 Query 35725 AAATATCTGCAT 35736 ||| |||||||| Sbjct 684365 AAAGATCTGCAT 684354 Score = 125 bits (138), Expect = 6e-24 Identities = 143/192 (74%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 35545 CTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAA 35604 |||||| || |||||||| |||| || ||| ||| | || ||||||||||| || ||||| Sbjct 684773 CTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGCCCATCTTCCAGCTGCTTGCCAGCAAA 684714 Query 35605 TATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGT 35664 |||| || |||||| || | || | || ||||||||| |||||| ||| | | Sbjct 684713 AATCAGCCTCTGCTGATCGGGGGGGATGCCTTCCTTGTCCTGGATCTTGGCCTTGACGTT 684654 Query 35665 TGCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCAC 35724 | | || || || | |||||||||| ||||| |||||||| ||||| || ||||| Sbjct 684653 CTCGATGGTATCACTGGGCTCCACCTCCAAGGTGATGGTTTTACCAGTCAAGGTCTTCAC 684594 Query 35725 AAATATCTGCAT 35736 || |||||||| Sbjct 684593 GAAGATCTGCAT 684582 Score = 116 bits (128), Expect = 3e-21 Identities = 141/192 (73%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 35545 CTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAA 35604 |||||| || |||||||| |||| || ||| ||| | || ||||||||||| || ||||| Sbjct 684075 CTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGCCCATCTTCCAGCTGCTTGCCAGCAAA 684016 Query 35605 TATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGT 35664 |||| || |||||| || | || | || ||||||||| |||||| ||| | | Sbjct 684015 AATCAGCCTCTGCTGATCGGGGGGGATGCCTTCCTTGTCCTGGATCTTGGCCTTGACGTT 683956 Query 35665 TGCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCAC 35724 | | |||||||| | |||||||||| ||||| || || || || | || ||||| Sbjct 683955 CTCGATGGTGTCGCTGGGCTCCACCTCCAAGGTGATGGTCTTGCCGGTGAGGGTCTTCAC 683896 Query 35725 AAATATCTGCAT 35736 || |||||||| Sbjct 683895 GAAGATCTGCAT 683884 Score = 87.8 bits (96), Expect = 2e-12 Identities = 84/108 (78%), Gaps = 0/108 (0%) Strand=Plus/Minus Query 35545 CTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAA 35604 |||||| || |||||||| |||| || ||| ||| | || ||||||||||| || ||||| Sbjct 684317 CTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGCCCATCTTCCAGCTGCTTGCCAGCAAA 684258 Query 35605 TATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTT 35652 |||| || |||||| || | || | || ||||||||| |||||| Sbjct 684257 AATCAGCCTCTGCTGATCGGGGGGGATGCCTTCCTTGTCCTGGATCTT 684210 >seq384 Length=852418 Score = 129 bits (142), Expect = 5e-25 Identities = 143/191 (75%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 35546 TCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAAT 35605 || || || |||||||| |||| || ||| ||| |||| |||||||||||||| ||||| Sbjct 86030 TCTTTCTGGATGTTGTAGTCGGACAGGGTGCGCCCGTCTTCCAGCTGCTTACCAGCAAAG 86089 Query 35606 ATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTT 35665 |||| || |||||| || | ||||| || || ||||| |||||| ||||| | | Sbjct 86090 ATCAGCCTCTGCTGATCGGGAGGAATGCCTTCTTTGTCTTGGATCTTGGCCTTCACATTC 86149 Query 35666 GCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACA 35725 | | ||||| || | || ||||| | ||||| || || || ||||| |||||||| Sbjct 86150 TCTATGGTGTCACTGGGCTCGACCTCAAGAGTGATTGTCTTGCCAGTCAAGGTTTTCACG 86209 Query 35726 AATATCTGCAT 35736 || |||||||| Sbjct 86210 AAGATCTGCAT 86220 Score = 120 bits (132), Expect = 3e-22 Identities = 141/191 (74%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 35546 TCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAAT 35605 || || || |||||||| || | || ||| ||| |||| |||||||||||||| || || Sbjct 86486 TCTTTCTGGATGTTGTAGTCAGACAGGGTGCGCCCGTCTTCCAGCTGCTTACCAGCGAAG 86545 Query 35606 ATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTT 35665 |||| || |||||| || | ||||| || || ||||| |||||| ||||| | | Sbjct 86546 ATCAGCCTCTGCTGATCGGGAGGAATGCCTTCTTTGTCTTGGATCTTGGCCTTCACATTC 86605 Query 35666 GCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACA 35725 | | |||||||| | || ||||| | ||||| || || || |||| || |||||| Sbjct 86606 TCTATGGTGTCGCTAGGCTCGACCTCAAGAGTGATGGTCTTGCCAGTCAGGGTCTTCACA 86665 Query 35726 AATATCTGCAT 35736 || |||||||| Sbjct 86666 AAGATCTGCAT 86676 Score = 116 bits (128), Expect = 3e-21 Identities = 141/192 (73%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 35545 CTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAA 35604 |||||| || |||||||| |||| || ||| ||| | || ||||||||||| || || || Sbjct 86257 CTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGCCCATCTTCCAGCTGCTTGCCAGCGAA 86316 Query 35605 TATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGT 35664 |||| || |||||| || | ||||| || || ||||| |||||| ||| | | Sbjct 86317 GATCAGCCTCTGCTGATCGGGAGGAATGCCTTCTTTGTCTTGGATCTTGGCCTTTACGTT 86376 Query 35665 TGCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCAC 35724 | | | ||||| || | || ||||| | |||||| || || || |||| || ||||| Sbjct 86377 TTCAATGGTGTCACTGGGCTCGACCTCGAGCGTGATGGTCTTGCCAGTCAGGGTCTTCAC 86436 Query 35725 AAATATCTGCAT 35736 ||| |||||||| Sbjct 86437 AAAGATCTGCAT 86448 Score = 107 bits (118), Expect = 2e-18 Identities = 139/192 (72%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 35545 CTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAA 35604 |||||| || |||||||| || | || ||| ||| | || |||||||||||||| || || Sbjct 85801 CTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGCCCATCTTCCAGCTGCTTACCAGCGAA 85860 Query 35605 TATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGT 35664 |||| || |||||| || | ||||| || || ||||| |||||| ||||| | Sbjct 85861 GATCAGCCTCTGCTGATCGGGAGGAATGCCTTCTTTGTCTTGGATCTTGGCCTTCACGTT 85920 Query 35665 TGCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCAC 35724 | | | ||||| || | || || || | ||||| || || || |||| || ||||| Sbjct 85921 TTCAATGGTGTCACTGGGCTCAACTTCAAGGGTGATGGTCTTGCCAGTCAGGGTCTTCAC 85980 Query 35725 AAATATCTGCAT 35736 || |||||||| Sbjct 85981 GAAGATCTGCAT 85992 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 450600310974160