Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Callipepla_20squamata_20[genbank_20GCA_5F002218305.1_202017-07-13] 34,302 sequences; 1,045,281,893 total letters Query= NC_026922.1 Length=157977 Score E Sequences producing significant alignments: (Bits) Value seq384 125 7e-24 seq448 123 3e-23 seq1256 89.7 5e-13 >seq384 Length=852418 Score = 125 bits (138), Expect = 7e-24 Identities = 164/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 134487 CCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCA 134546 ||||| || || |||| ||| ||||| || |||||||| || || |||||||||||| Sbjct 85994 CCTCCCCTCAGACGCAGCACCAGGTGCAGGGTGGATTCTTTCTGGATGTTGTAGTCGGAC 86053 Query 134547 ACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGT 134606 | |||| | ||| || ||||| || || ||||| |||| | |||||||||||| || Sbjct 86054 AGGGTGCGCCCGTCTTCCAGCTGCTTACCAGCAAAGATCAGCCTCTGCTGATCGGGAGGA 86113 Query 134607 ATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACG 134666 ||||||||||| ||||| || || || || || | ||||| | || || Sbjct 86114 ATGCCTTCTTTGTCTTGGATCTTGGCCTTCACATTCTCTATGGTGTCACTGGGCTCGACC 86173 Query 134667 TCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713 || ||||| || || || || || || ||||| ||||| || ||||| Sbjct 86174 TCAAGAGTGATTGTCTTGCCAGTCAAGGTTTTCACGAAGATCTGCAT 86220 Score = 116 bits (128), Expect = 4e-21 Identities = 164/228 (72%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 134487 CCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCA 134546 || ||||| || |||| ||| ||||| || ||||| ||||| || |||||||||||| Sbjct 86222 CCACCTCTCAGACGCAGCACCAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAC 86281 Query 134547 ACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGT 134606 | |||| | || || ||||| ||||| || || |||| | |||||||||||| || Sbjct 86282 AGGGTGCGCCCATCTTCCAGCTGCTTGCCAGCGAAGATCAGCCTCTGCTGATCGGGAGGA 86341 Query 134607 ATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAAT-GTGTCGGACGATTCCAC 134665 ||||||||||| ||||| || || || | || | |||| ||||| | || || Sbjct 86342 ATGCCTTCTTTGTCTTGGATCTTGGCCTTTA-CGTTTTCAATGGTGTCACTGGGCTCGAC 86400 Query 134666 GTCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713 ||||| || ||||| || || || | || || || || || ||||| Sbjct 86401 CTCGAGCGTGATGGTCTTGCCAGTCAGGGTCTTCACAAAGATCTGCAT 86448 Score = 113 bits (124), Expect = 5e-20 Identities = 165/231 (71%), Gaps = 2/231 (1%) Strand=Plus/Plus Query 134484 TTTCCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCG 134543 || |||||||| || |||| ||| ||||| || ||||| ||||| || ||||||||||| Sbjct 85763 TTGCCTCCTCTCAGACGCAGCACCAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCA 85822 Query 134544 CCAACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGC 134603 | |||| | || || ||||| || || || || |||| | |||||||||||| Sbjct 85823 GACAGGGTGCGCCCATCTTCCAGCTGCTTACCAGCGAAGATCAGCCTCTGCTGATCGGGA 85882 Query 134604 GGTATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAAT-GTGTCGGACGATTC 134662 || ||||||||||| ||||| || || || | || | |||| ||||| | || Sbjct 85883 GGAATGCCTTCTTTGTCTTGGATCTTGGCCTTCA-CGTTTTCAATGGTGTCACTGGGCTC 85941 Query 134663 CACGTCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713 || || || || ||||| || || || | || || ||||| || ||||| Sbjct 85942 AACTTCAAGGGTGATGGTCTTGCCAGTCAGGGTCTTCACGAAGATCTGCAT 85992 Score = 113 bits (124), Expect = 5e-20 Identities = 163/230 (71%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 134487 CCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCA 134546 ||||| || || |||| ||| ||||| || |||||||| || || ||||||||||| Sbjct 86450 CCTCCCCTCAGACGCAGCACCAGGTGCAGGGTGGATTCTTTCTGGATGTTGTAGTCAGAC 86509 Query 134547 ACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGT 134606 | |||| | ||| || ||||| || || || || |||| | |||||||||||| || Sbjct 86510 AGGGTGCGCCCGTCTTCCAGCTGCTTACCAGCGAAGATCAGCCTCTGCTGATCGGGAGGA 86569 Query 134607 ATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACG 134666 ||||||||||| ||||| || || || || || | |||||| | || || Sbjct 86570 ATGCCTTCTTTGTCTTGGATCTTGGCCTTCACATTCTCTATGGTGTCGCTAGGCTCGACC 86629 Query 134667 TCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCATTTT 134716 || ||||| ||||| || || || | || || || || || ||||| || Sbjct 86630 TCAAGAGTGATGGTCTTGCCAGTCAGGGTCTTCACAAAGATCTGCATGTT 86679 >seq448 Length=747048 Score = 123 bits (136), Expect = 3e-23 Identities = 166/231 (72%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 134487 CCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCA 134546 ||||| || || |||| ||||| || || ||||| ||||| || |||||||||||| Sbjct 684110 CCTCCCCTCAGGCGCAGGACGAGATGCAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAC 684051 Query 134547 ACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGT 134606 | |||| | || || ||||| ||||| |||||||||| | |||||||||||| || Sbjct 684050 AGGGTGCGCCCATCTTCCAGCTGCTTGCCAGCAAAAATCAGCCTCTGCTGATCGGGGGGG 683991 Query 134607 ATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACG 134666 |||||||| || || || || || ||||| || | |||||| | ||||| Sbjct 683990 ATGCCTTCCTTGTCCTGGATCTTGGCCTTGACGTTCTCGATGGTGTCGCTGGGCTCCACC 683931 Query 134667 TCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCATTTTG 134717 || | || ||||| || ||||| | || || ||||| || ||||| ||| Sbjct 683930 TCCAAGGTGATGGTCTTGCCGGTGAGGGTCTTCACGAAGATCTGCATGTTG 683880 Score = 122 bits (134), Expect = 9e-23 Identities = 165/230 (72%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 134484 TTTCCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCG 134543 || || || || || |||| ||| ||||| || ||||| ||||| || |||||||||||| Sbjct 684811 TTACCACCCCTCAGGCGCAGCACCAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCG 684752 Query 134544 CCAACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGC 134603 | |||| | || || ||||| ||||| |||||||||| | |||||||||||| Sbjct 684751 GACAGGGTGCGCCCATCTTCCAGCTGCTTGCCAGCAAAAATCAGCCTCTGCTGATCGGGG 684692 Query 134604 GGTATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCC 134663 || |||||||| || || || || || ||||| || | || || | ||| Sbjct 684691 GGGATGCCTTCCTTGTCCTGGATCTTGGCCTTGACGTTCTCGATGGTATCACTGGGCTCC 684632 Query 134664 ACGTCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713 || || | || ||||||||||| || || || || ||||| || ||||| Sbjct 684631 ACCTCCAAGGTGATGGTTTTACCAGTCAAGGTCTTCACGAAGATCTGCAT 684582 Score = 116 bits (128), Expect = 4e-21 Identities = 162/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 134487 CCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCA 134546 ||||| || || |||| || || || || ||||| ||||| || |||||||||||| Sbjct 684580 CCTCCCCTCAGGCGCAGGACAAGATGCAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAC 684521 Query 134547 ACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGT 134606 | |||| | ||| || ||||| ||||| |||||||||| | |||||||||||| || Sbjct 684520 AGGGTGCGCCCGTCTTCCAGCTGCTTGCCAGCAAAAATCAGCCTCTGCTGATCGGGGGGG 684461 Query 134607 ATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACG 134666 |||||||| || || || || || ||||| || | ||||| | ||||| Sbjct 684460 ATGCCTTCCTTGTCCTGGATCTTGGCCTTGACGTTCTCGATGGTGTCACTGGGCTCCACC 684401 Query 134667 TCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713 || | || ||||||||||| || | || || || || || ||||| Sbjct 684400 TCCAAGGTGATGGTTTTACCAGTCAGGGTCTTCACAAAGATCTGCAT 684354 Score = 109 bits (120), Expect = 6e-19 Identities = 110/143 (77%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 134487 CCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCA 134546 ||||| || || |||| ||| ||||| || ||||| ||||| || |||||||||||| Sbjct 684352 CCTCCCCTCAGGCGCAGCACCAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAC 684293 Query 134547 ACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGT 134606 | |||| | || || ||||| ||||| |||||||||| | |||||||||||| || Sbjct 684292 AGGGTGCGCCCATCTTCCAGCTGCTTGCCAGCAAAAATCAGCCTCTGCTGATCGGGGGGG 684233 Query 134607 ATGCCTTCTTTTTCTTGAATTTT 134629 |||||||| || || || || || Sbjct 684232 ATGCCTTCCTTGTCCTGGATCTT 684210 >seq1256 Length=67100 Score = 89.7 bits (98), Expect = 5e-13 Identities = 99/132 (75%), Gaps = 0/132 (0%) Strand=Plus/Minus Query 8232 CGCCATTATCGAATGTCAAAACGAAACCGGTATGCCGTACATGCTGTACAAAGACGCTTG 8291 |||||| ||||| | || | || || || | ||| |||||||||||||||||| |||| Sbjct 29863 CGCCATCATCGAGTCGCAGACGGAGACTGGCACGCCTTACATGCTGTACAAAGACTCTTG 29804 Query 8292 CAACGCCAAAAGCAATCAAAGCAACGTGGGCACCATTTGTTGCAGCAATCTGTGCGCTGA 8351 |||| || |||||||| ||| |||| ||||| ||||||||||||||| | || Sbjct 29803 CAACAGGAAGAGCAATCAGCAGAACCTGGGGACCATCAAATGCAGCAATCTGTGCACAGA 29744 Query 8352 AATTGTACAGTA 8363 || || |||| Sbjct 29743 GATAGTGGAGTA 29732 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 505181697801040