Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Callipepla_20squamata_20[genbank_20GCA_5F002218305.1_202017-07-13] 34,302 sequences; 1,045,281,893 total letters Query= NC_027016.1 Length=226084 Score E Sequences producing significant alignments: (Bits) Value seq598 84.2 3e-11 >seq598 Length=532752 Score = 84.2 bits (92), Expect = 3e-11 Identities = 93/124 (75%), Gaps = 0/124 (0%) Strand=Plus/Minus Query 214100 GAGATGTTTGGACTCGTGCCCGGTTTCATGGTGTACGCCATTATCTGGCTGAGAGAGCAC 214159 ||| ||||||| | || || || | ||| |||| || | || ||||||||||| ||| Sbjct 405914 GAGGTGTTTGGCTTGGTCCCAGGCCTAATGATGTATGCAACAATATGGCTGAGAGAACAC 405855 Query 214160 AACAGGGTTTGCGACGTGCTGAAACAAGAGCACCCGGAATGGAACGACGAACAGCTGTTC 214219 || || || || ||| | ||||||||||||| || || ||| | || || ||||| ||| Sbjct 405854 AATAGAGTCTGTGACATCTTGAAACAAGAGCATCCAGAGTGGGATGATGAGCAGCTATTC 405795 Query 214220 CAGA 214223 |||| Sbjct 405794 CAGA 405791 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 723030649548480