Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Callipepla_20squamata_20[genbank_20GCA_5F002218305.1_202017-07-13] 34,302 sequences; 1,045,281,893 total letters Query= NC_027778.1 Length=124244 Score E Sequences producing significant alignments: (Bits) Value seq470 113 4e-20 seq184 100 2e-16 seq518 82.4 6e-11 >seq470 Length=704619 Score = 113 bits (124), Expect = 4e-20 Identities = 119/157 (76%), Gaps = 0/157 (0%) Strand=Plus/Minus Query 41047 TGATGGCATTGCCACCTTGTCATTTGTTATGTCAGTTTTACGTTTGCAATGGTGAACTGT 41106 ||||||| ||||| ||||| ||| | || ||||| || ||| ||||||||||||| Sbjct 26915 TGATGGCTTTGCCGCCTTGCCATGCTCTCTGCCAGTTCTATGTTCTGAATGGTGAACTGT 26856 Query 41107 CATGTCAATTGTATCAAAGATCAGGTGACATGGGACTAGGGGTCCCGTTTAACATAGCGA 41166 | || ||| |||| || || || || || ||||||||||| || || || || || || | Sbjct 26855 CTTGCCAACTGTACCAGAGGTCTGGAGATATGGGACTAGGAGTGCCTTTCAATATTGCCA 26796 Query 41167 GTTATGCTCTGCTCACGTATATGATTGCACACGTTAC 41203 | ||| | |||||||| || |||||||| || || || Sbjct 26795 GCTATTCGCTGCTCACATACATGATTGCCCATGTCAC 26759 >seq184 Length=1437213 Score = 100 bits (110), Expect = 2e-16 Identities = 89/109 (82%), Gaps = 2/109 (2%) Strand=Plus/Plus Query 43913 CAAGAAGTTCA-ATTACCAGAAGCACGATGTTTTTATGGGTTTCAAATTGCCATAGAAAA 43971 |||||||| || ||||| ||| || || ||||| ||||| || || |||||||| ||||| Sbjct 72310 CAAGAAGTGCAGATTAC-AGAGGCGCGTTGTTTCTATGGCTTCCAGATTGCCATGGAAAA 72368 Query 43972 TATTCATTCGGAAATGTACAGTCTTCTGATAGATACGTACATCAAAGAT 44020 || || || ||||||||||||||||| || || || ||||| |||||| Sbjct 72369 CATACACTCAGAAATGTACAGTCTTCTCATTGACACATACATTAAAGAT 72417 Score = 98.7 bits (108), Expect = 8e-16 Identities = 102/134 (76%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 44123 GGAGAACGACTTGTCGCGTTTGCAGTTGTGGAAGGCATTTTCTTTTCAGGATCGTTTGCG 44182 |||||||| | || || ||||||| ||||||||||| |||||||| || || ||||| Sbjct 73874 GGAGAACGTGTGGTAGCATTTGCAGCAGTGGAAGGCATCTTCTTTTCTGGCTCTTTTGCA 73933 Query 44183 GCCATATTTTGGTTAAAGAAACGAGGTTTGATGCCTGGGTTGACGTTTTCAAATGAGTTA 44242 | || || ||| | |||||| ||||||| |||||||| | || || || ||||| | Sbjct 73934 TCAATTTTCTGGCTGAAGAAAAGAGGTTTAATGCCTGGACTCACTTTCTCTAATGAACTC 73993 Query 44243 ATAAGTCGTGATGA 44256 || ||| | ||||| Sbjct 73994 ATCAGTAGAGATGA 74007 >seq518 Length=643042 Score = 82.4 bits (90), Expect = 6e-11 Identities = 74/93 (80%), Gaps = 0/93 (0%) Strand=Plus/Minus Query 43928 CCAGAAGCACGATGTTTTTATGGGTTTCAAATTGCCATAGAAAATATTCATTCGGAAATG 43987 |||||||| || ||||| ||||| || || ||| ||| || ||| |||| ||||| ||| Sbjct 340212 CCAGAAGCTCGTTGTTTCTATGGCTTCCAGATTCTCATTGAGAATGTTCACTCGGAGATG 340153 Query 43988 TACAGTCTTCTGATAGATACGTACATCAAAGAT 44020 ||||| | || ||||| || |||||||||||| Sbjct 340152 TACAGCTTGCTTATAGACACTTACATCAAAGAT 340120 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397289841283510