Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Callipepla_20squamata_20[genbank_20GCA_5F002218305.1_202017-07-13] 34,302 sequences; 1,045,281,893 total letters Query= NC_028110.1 Length=171045 Score E Sequences producing significant alignments: (Bits) Value seq151 95.1 1e-14 seq22 87.8 2e-12 seq518 86.0 7e-12 seq1256 82.4 8e-11 >seq151 Length=1588102 Score = 95.1 bits (104), Expect = 1e-14 Identities = 88/112 (79%), Gaps = 0/112 (0%) Strand=Plus/Plus Query 152029 GTGAAGATGTATCGGGAGCTGGCCGCATCCTTGCCACCTGCCAGCCGCGTTCCAAACTGT 152088 |||||||||||||| | ||| || | ||||| ||||| ||||| || |||||||| Sbjct 1226665 GTGAAGATGTATCGAGGGCTTGCAGAGTCCTTCCCACCGTGCAGCCTTGTGCCAAACTGC 1226724 Query 152089 CCAGAGGGCTCGAGGAGGTTGAGGTTGTTGGCGCCCACGAAATTCTGAGCCA 152140 || ||||| || ||||| ||||||||| ||||||||| |||||||||| Sbjct 1226725 CCGATGGGCTGCAGCAGGTTCAGGTTGTTGCTGCCCACGAAGTTCTGAGCCA 1226776 Score = 84.2 bits (92), Expect = 2e-11 Identities = 88/116 (76%), Gaps = 0/116 (0%) Strand=Plus/Plus Query 117305 GTGAAAATGTAACGAGAGCTTGCAGCATCCTTGCCACCAGCAAGACGCGTACCGAATTGT 117364 ||||| ||||| |||| |||||||| ||||| ||||| || | || || || || Sbjct 1226665 GTGAAGATGTATCGAGGGCTTGCAGAGTCCTTCCCACCGTGCAGCCTTGTGCCAAACTGC 1226724 Query 117365 CCACTCGGCTCCAAGAGGTTCAGGTTGTTGGCGCCCACAAAGTTTTGAGCCAAGTT 117420 || | |||| || ||||||||||||||| |||||| ||||| ||||||| ||| Sbjct 1226725 CCGATGGGCTGCAGCAGGTTCAGGTTGTTGCTGCCCACGAAGTTCTGAGCCAGGTT 1226780 >seq22 Length=3113147 Score = 87.8 bits (96), Expect = 2e-12 Identities = 95/126 (75%), Gaps = 0/126 (0%) Strand=Plus/Plus Query 117304 AGTGAAAATGTAACGAGAGCTTGCAGCATCCTTGCCACCAGCAAGACGCGTACCGAATTG 117363 ||||||||| || |||| || ||||||||||| |||||| ||| | ||||| || || Sbjct 761567 AGTGAAAATATAGCGAGGACTGGCAGCATCCTTTCCACCATGAAGCCTGGTACCAAACTG 761626 Query 117364 TCCACTCGGCTCCAAGAGGTTCAGGTTGTTGGCGCCCACAAAGTTTTGAGCCAAGTTGAC 117423 ||| | || | | ||||| | ||||| || |||||||| |||||||||||||| Sbjct 761627 ACCAATAGGTTGTAGAAGGTTAACATTGTTACTTCCAACAAAGTTCTGAGCCAAGTTGAC 761686 Query 117424 AATCGT 117429 ||| || Sbjct 761687 AATAGT 761692 >seq518 Length=643042 Score = 86.0 bits (94), Expect = 7e-12 Identities = 92/122 (75%), Gaps = 0/122 (0%) Strand=Plus/Plus Query 74772 TCATCTCTGCTTATCAATTCATTCGAAAACGAAAGGCCAGGCATAAGTCCACGCTTCTTC 74831 ||||||||||| || | |||||| || || | | |||||||| || || | ||||||| Sbjct 337088 TCATCTCTGCTAATAAGTTCATTGGAGAAAGTCAATCCAGGCATCAGGCCCCTCTTCTTC 337147 Query 74832 AACCAAAAGATGGCACAGAAGGAACCACTGAAGAAGATGCCTTCGACACACGCAAAGGCG 74891 | |||||| || ||| || ||||| |||||||||||||| || ||||||||| Sbjct 337148 AGCCAAAATATAGCAGCAAATGAACCCGAAAAGAAGATGCCTTCAACTGCAGCAAAGGCG 337207 Query 74892 AC 74893 || Sbjct 337208 AC 337209 >seq1256 Length=67100 Score = 82.4 bits (90), Expect = 8e-11 Identities = 77/98 (79%), Gaps = 0/98 (0%) Strand=Plus/Minus Query 53330 AGCTGCTTCCTGGTGGCGATGAAGGATGACTCGATCGACGGCATCTACGAGACGCTCAAG 53389 ||||| |||||| || |||||||||||| ||||| || |||||||| || || ||| Sbjct 32480 AGCTGTTTCCTGCTGTGCATGAAGGATGACAGCATCGAAGGGATCTACGACACCCTGAAG 32421 Query 53390 GAGTGTGCCCACATCTCCAAGTGGTCGGGTGGTATCGG 53427 |||| |||| |||||||||| ||||||| ||||| Sbjct 32420 CAGTGCGCCCTGATCTCCAAGTCTGCGGGTGGGATCGG 32383 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 546981367459600