Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Callipepla_20squamata_20[genbank_20GCA_5F002218305.1_202017-07-13] 34,302 sequences; 1,045,281,893 total letters Query= NC_028112.1 Length=178262 Score E Sequences producing significant alignments: (Bits) Value seq384 159 4e-34 seq448 145 9e-30 seq1256 86.0 7e-12 >seq384 Length=852418 Score = 159 bits (176), Expect = 4e-34 Identities = 166/218 (76%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| ||||| || ||||| || || |||||||| || || ||||| |||||| | || Sbjct 85992 ATGCAGATCTTCGTGAAGACCCTGACTGGCAAGACCATCACCCTTGAAGTTGAGCCCAGT 85933 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | ||||| ||| ||||||| || || || ||||| || || |||||||| || ||| Sbjct 85932 GACACCATTGAAAACGTGAAGGCCAAGATCCAAGACAAAGAAGGCATTCCTCCCGATCAG 85873 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 ||| | || || || ||||||||||| || || |||| || ||||| | ||||| || Sbjct 85872 CAGAGGCTGATCTTCGCTGGTAAGCAGCTGGAAGATGGGCGCACCCTGTCTGACTACAAC 85813 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCT 27623 |||| ||||| ||||| || || || || ||||||| Sbjct 85812 ATCCAGAAGGAGTCCACCCTGCACCTGGTGCTGCGTCT 85775 Score = 154 bits (170), Expect = 2e-32 Identities = 165/218 (76%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| |||||||| ||||| || || |||||||| || ||||||||||| ||| | | Sbjct 86676 ATGCAGATCTTTGTGAAGACCCTGACTGGCAAGACCATCACTCTTGAGGTCGAGCCTAGC 86617 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | ||| | ||| ||||||| || || || ||||| || || |||||||| || ||| Sbjct 86616 GACACCATAGAGAATGTGAAGGCCAAGATCCAAGACAAAGAAGGCATTCCTCCCGATCAG 86557 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 ||| | || || || ||||||||||| || || || | || ||||| | ||||| || Sbjct 86556 CAGAGGCTGATCTTCGCTGGTAAGCAGCTGGAAGACGGGCGCACCCTGTCTGACTACAAC 86497 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCT 27623 |||| || |||||||| || || || || ||||||| Sbjct 86496 ATCCAGAAAGAATCCACCCTGCACCTGGTGCTGCGTCT 86459 Score = 150 bits (166), Expect = 2e-31 Identities = 164/218 (75%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| ||||| || || || | || |||||||| || ||||||||||| ||| | || Sbjct 86220 ATGCAGATCTTCGTGAAAACCTTGACTGGCAAGACAATCACTCTTGAGGTCGAGCCCAGT 86161 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | ||| | ||| ||||||| || || || ||||| || || |||||||| || ||| Sbjct 86160 GACACCATAGAGAATGTGAAGGCCAAGATCCAAGACAAAGAAGGCATTCCTCCCGATCAG 86101 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 ||| | || || |||||||||||||| || || || | || ||||| | ||||| || Sbjct 86100 CAGAGGCTGATCTTTGCTGGTAAGCAGCTGGAAGACGGGCGCACCCTGTCCGACTACAAC 86041 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCT 27623 |||| || |||||||| || || || || ||||||| Sbjct 86040 ATCCAGAAAGAATCCACCCTGCACCTGGTGCTGCGTCT 86003 >seq448 Length=747048 Score = 145 bits (160), Expect = 9e-30 Identities = 163/218 (75%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| ||||| || ||||| || ||||||||||| || || | ||||| ||| | | Sbjct 683884 ATGCAGATCTTCGTGAAGACCCTCACCGGCAAGACCATCACCTTGGAGGTGGAGCCCAGC 683943 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | ||| | || | ||||| || || ||||||||||| || || || || || ||| Sbjct 683944 GACACCATCGAGAACGTCAAGGCCAAGATCCAGGACAAGGAAGGCATCCCCCCCGATCAG 684003 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 ||| | || ||||||||||| ||||| || || |||| || ||||| | ||||| || Sbjct 684004 CAGAGGCTGATTTTTGCTGGCAAGCAGCTGGAAGATGGGCGCACCCTGTCCGACTACAAC 684063 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCT 27623 |||| ||||| ||||| || ||||| ||| |||| || Sbjct 684064 ATCCAGAAGGAGTCCACCCTGCATCTCGTCCTGCGCCT 684101 Score = 136 bits (150), Expect = 5e-27 Identities = 161/218 (74%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| |||||||| ||||| || || || || || || || | ||||| ||| | || Sbjct 684354 ATGCAGATCTTTGTGAAGACCCTGACTGGTAAAACCATCACCTTGGAGGTGGAGCCCAGT 684413 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | ||| | || | ||||| || || ||||||||||| || || || || || ||| Sbjct 684414 GACACCATCGAGAACGTCAAGGCCAAGATCCAGGACAAGGAAGGCATCCCCCCCGATCAG 684473 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 ||| | || ||||||||||| ||||| || || || | || ||||| | ||||| || Sbjct 684474 CAGAGGCTGATTTTTGCTGGCAAGCAGCTGGAAGACGGGCGCACCCTGTCCGACTACAAC 684533 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCT 27623 |||| ||||| ||||| || ||||| ||| |||| || Sbjct 684534 ATCCAGAAGGAGTCCACCCTGCATCTTGTCCTGCGCCT 684571 Score = 131 bits (144), Expect = 2e-25 Identities = 165/227 (73%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| ||||| || ||||| | || || || || || || | ||||| ||| | || Sbjct 684582 ATGCAGATCTTCGTGAAGACCTTGACTGGTAAAACCATCACCTTGGAGGTGGAGCCCAGT 684641 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 |||| ||| | || | ||||| || || ||||||||||| || || || || || ||| Sbjct 684642 GATACCATCGAGAACGTCAAGGCCAAGATCCAGGACAAGGAAGGCATCCCCCCCGATCAG 684701 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 ||| | || ||||||||||| ||||| || || |||| || ||||| | ||||| || Sbjct 684702 CAGAGGCTGATTTTTGCTGGCAAGCAGCTGGAAGATGGGCGCACCCTGTCCGACTACAAC 684761 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 |||| ||||| ||||| || || || || |||| || | ||||| Sbjct 684762 ATCCAGAAGGAGTCCACCCTGCACCTGGTGCTGCGCCTGAGGGGTGG 684808 Score = 100 bits (110), Expect = 3e-16 Identities = 158/232 (68%), Gaps = 14/232 (6%) Strand=Plus/Plus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| ||||| || ||||| | || || ||||| || ||||| ||||| ||| | || Sbjct 684112 ATGCAGATCTTCGTGAAGACCTTGACAGGTAAGACCATCACTCTGGAGGTCGAGCCCAGT 684171 Query 27466 GATAGCATTGCA--------------AATTTGAAGGCTAAAATTCAGGACAAGGAGGGAA 27511 |||| || | ||||| || || ||||||||||| || | Sbjct 684172 GATANNNNNNNNNNNNNNNNNNNNAGAACGTCAAGGCCAAGATCCAGGACAAGGAAGGCA 684231 Query 27512 TTCCTCCAGACCAGCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCC 27571 | || || || |||||| | || ||||||||||| ||||| || || |||| || |||| Sbjct 684232 TCCCCCCCGATCAGCAGAGGCTGATTTTTGCTGGCAAGCAGCTGGAAGATGGGCGCACCC 684291 Query 27572 TAGCAGACTATAATGTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCT 27623 | | ||||| || |||| ||||| ||||| || || || || |||| || Sbjct 684292 TGTCCGACTACAACATCCAGAAGGAGTCCACCCTGCACCTGGTGCTGCGCCT 684343 >seq1256 Length=67100 Score = 86.0 bits (94), Expect = 7e-12 Identities = 149/213 (70%), Gaps = 4/213 (2%) Strand=Plus/Plus Query 80575 GGAGACCCCGCGAACGTCTCGTACGGGCCCTCCGTCTTGGCCAGCTCACA-CGA-CTCCA 80632 ||||| ||| || |||| || ||||| || ||| || || |||||||| | | || | Sbjct 28239 GGAGAACCCTCGTACGTTTCATACGGTCCTTCCTGCTCAGCAAGCTCACAGCTAGCTTCC 28298 Query 80633 TAAGGGCCGCGTGATAAATGCACTCAAAGACGCCCTTGTTCACACCGCGCGCCTGTGGGT 80692 ||| ||| | ||| ||| |||||| | || ||||| | |||| ||| Sbjct 28299 AAAGCACCG--TAATAGATGGTCTCAAATATCTGCTGGTTCAGGAGCTGGGCCTCGGGGC 28356 Query 80693 CGTCGAACGACAAGCCCATCATCATGAACACGTCAGCCAGGCCCTGAACGCCGATGGCGA 80752 ||||| | | | ||| | ||||| |||||||||||||||| ||||||||| ||| Sbjct 28357 TTTCGAAGGGATACCTCATGAGGATGAAGGCGTCAGCCAGGCCCTGCACGCCGATGCCGA 28416 Query 80753 TCGGGCGGTGGCGCTTGTTCGATCGCTCGGCCT 80785 | |||||||| || |||| || ||||| |||| Sbjct 28417 TGGGGCGGTGCCGTCTGTTGGAGCGCTCTGCCT 28449 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 570065865158240