Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Callipepla_20squamata_20[genbank_20GCA_5F002218305.1_202017-07-13] 34,302 sequences; 1,045,281,893 total letters Query= NC_028238.1 Length=188534 Score E Sequences producing significant alignments: (Bits) Value seq80 87.8 2e-12 >seq80 Length=2138722 Score = 87.8 bits (96), Expect = 2e-12 Identities = 101/135 (75%), Gaps = 1/135 (1%) Strand=Plus/Minus Query 32826 GGACAGGCATTTTTTGGAGCACAGATAAATTCTTTTATACATGTTATAATGTATAGTTAT 32885 |||||| | ||||||||||| ||||| ||| | ||||| |||||||| ||||| | ||| Sbjct 549180 GGACAG-CTTTTTTTGGAGCCCAGATGAATGCATTTATTCATGTTATTATGTACATGTAT 549122 Query 32886 TACGGATTAACAGCAATAGGTCCTTCCTTGCGAAAATATCTATGGTGGAAAAAATATTTA 32945 ||||||||| | || || ||| | | ||||| || ||||||||| ||| || Sbjct 549121 TACGGATTAGCTGCCTGTGGCCCTAAAGTTCAGAAATACCTGTGGTGGAAACGATACTTG 549062 Query 32946 ACTATCATACAATTG 32960 ||||| | |||||| Sbjct 549061 ACTATATTGCAATTG 549047 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 602922171152480