Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Callipepla_20squamata_20[genbank_20GCA_5F002218305.1_202017-07-13] 34,302 sequences; 1,045,281,893 total letters Query= NC_028379.1 Length=205896 Score E Sequences producing significant alignments: (Bits) Value seq476 333 3e-86 seq167 89.7 7e-13 >seq476 Length=696916 Score = 333 bits (368), Expect = 3e-86 Identities = 672/991 (68%), Gaps = 16/991 (2%) Strand=Plus/Minus Query 13608 GACTACGTGAACATGACGGCCGACTGCGTG-GCCTTCGTGAAAGACAGGGGGTATCTCGT 13666 || ||| ||||||||||| ||||||| || || | || || | || | || ||| Sbjct 620452 GAGTACCTGAACATGACGAAGGACTGCGGCAGCTTTAGGGAGAGCC-GGCGCTACGTCGA 620394 Query 13667 GAGGCCCCTGAGCCTGGAAGAGGTCGAGTTTCCCATCGCCTACTCGATCGTGATCCACCA 13726 | || |||||| ||| |||| || || |||||||||||||| || ||||||||||| Sbjct 620393 GTTCCCGCTGAGCGAGGAGGAGGCCGGCTTCCCCATCGCCTACTCCATGGTGATCCACCA 620334 Query 13727 CAAGATCGAGATGTTCGAGCGCCTCCTGAGGGCCATCTACGCCCCGCAGAACCTCTACTG 13786 ||||||||||||||||||||| |||||| | || ||||||||||||||||| ||||||| Sbjct 620333 CAAGATCGAGATGTTCGAGCGGCTCCTGCGCTCCGTCTACGCCCCGCAGAACGTCTACTG 620274 Query 13787 CGTCCACGTGGACTCCAAGTCCGGCGACGAGTTCATCCGGGGCGTCTCGGCCATCGCCAG 13846 ||||||||||||| ||||| | || || ||| | || ||| |||||||||| Sbjct 620273 CGTCCACGTGGACGCCAAGGCTCCCGCCGCCTTCCAGCAGGCCGTGCGGGCCATCGCCGC 620214 Query 13847 GTGCTTCCCTAACGTGGCCCTGGCCCACCGGCTGCACGACGTGGTGTACGGCTCCTGGAG 13906 |||||||| ||||| | ||||| ||| ||| | ||||||||||| ||| ||| Sbjct 620213 CTGCTTCCCCAACGTCTTCGTGGCCAGCCGCCTGGAGAGCGTGGTGTACGCCTCGTGGTC 620154 Query 13907 TCGCGTGCAGGCCGACCTCAGCTGCATGTCGGACCTGGACGCCTCCCCCGTCAAGTGGAG 13966 || ||||||||||||||| ||||||| ||||||| | |||||| ||| | Sbjct 620153 CCGGCTGCAGGCCGACCTCAACTGCATGCGGGACCTGCTGCGCAGCCCCGTGCCCTGGCG 620094 Query 13967 GTACCTGCTCAACCTGTGCGGGATGGACTTCCCGCTCAAGACCAACCTGGAGATCGTGCG 14026 ||| |||||||| |||||| | ||||||||| ||||||||||| |||||| || || Sbjct 620093 CTACGTGCTCAACACGTGCGGCACGGACTTCCCCATCAAGACCAACGCGGAGATGGTCCG 620034 Query 14027 GGCGCTGAAGGCCCTGGGCGGCAAGAACGCCCTGGAGAGCGAGGGCATGCCCAACCACAA 14086 |||||| ||| ||| || ||||| | ||||| |||| | | | |||| Sbjct 620033 CGCGCTGCAGGTGCTGCAGGGGCAGAACAGCATGGAGTCCGAGAGGCCGACGGCGTACAA 619974 Query 14087 GCTGCACCGCATCAGGAAGAGGCACGTGGTGGCCAGCGGCGGCGTGGTGGTC-AACACCG 14145 || | | || | ||||| ||| | || || | || || ||| | Sbjct 619973 GCAGGAGCG---CTGGAAGTACCAC----CACCGAGTGGAGCAGTTCATCTCGCGCACGG 619921 Query 14146 GCAGGAACAAGGCCCCGCCGCCGCTCAGGATCCCCATCTTTGCGGGAAACGCTTACTTTG 14205 || | ||| | || || |||||| | ||||| || |||| | ||| ||| | | Sbjct 619920 CCACGGCGAAGCCGCCTCCTCCGCTCCGCTCGCCCATGTTCACGGGCAGCGCCTACATCG 619861 Query 14206 CGGTCACCCGGGAGTTCGTGGACTTCGTCCTCAAGGACGAGCCGGTGGCCCTGCTCATGC 14265 ||| ||| |||| |||||| ||| || ||||| ||| | | | || | Sbjct 619860 CGGCCACGCGGGCCTTCGTGCGGCACGTGCTGGAGGACCCCACGGCGCAGCGGTTCCTCG 619801 Query 14266 ACTGGTTCGAGGACACGTACAGCCCCGACGAGCACCTGTGGGCCACCGTGCAGAGAATGT 14325 | ||| | ||||||| |||||||||||||||||| |||||||||| || | | | Sbjct 619800 AGTGGGCCAAGGACACCTACAGCCCCGACGAGCACGTGTGGGCCACGCTGAACCGCGCGC 619741 Query 14326 ACGGGACGCCCGGGGGGATCCCCGTTCACGTCAAGTACGACACCTCGGACATGTGGGCCA 14385 ||| |||||| | | ||| ||| ||||| | | || |||||| || Sbjct 619740 CCGGCGTGCCCGGCGCCGTGCCCCACAACGACAAGTTCCAGCTGTCCGACATGAACGCGC 619681 Query 14386 AGGTCAGGTTCGTCAAGTGGCACTACTACGAGGGGGATATCAAGAAAGGGGCCCTGTACC 14445 | | | | ||||||||||| ||| || || || | | || || | |||| Sbjct 619680 TGCCCCGCCTGGTCAAGTGGCAGTACCTGGACGGCGACACGAGCCGCGGAGCGCCCTACC 619621 Query 14446 CGCCTTGCGACGGCATCCACGTCCA---CGCCATCTGCATCTTCGGGTCCGGCGACGTGA 14502 |||| ||| ||| || | |||| |||| ||||| | | |||| |||| |||||| Sbjct 619620 CGCCCTGCACCGG---CCGCTTCCAGCGCGCCGTCTGCGTGTACGGGGCCGGGGACGTGG 619564 Query 14503 AGTGGCTGAAGAGCGTCCCGCACCTGTTCGCCAACAAGTTCGACGACGAGACGGACGAGT 14562 ||| || | | | ||||| || |||||||||||||||| ||| |||||| Sbjct 619563 CCTGGATGCTGCGGCAGCACCACCTCTTGGCCAACAAGTTCGACGCCGAAGTGGACGACG 619504 Query 14563 TCGCCGTGCGCTGTCTGGACGAGGACGTGCG 14593 |||||| | || || || || || |||| Sbjct 619503 CCGCCGTCCAGTGCCTCGAGCAGCACCTGCG 619473 >seq167 Length=1485318 Score = 89.7 bits (98), Expect = 7e-13 Identities = 213/314 (68%), Gaps = 16/314 (5%) Strand=Plus/Minus Query 13734 GAGATGTTCGAGCGCCTCCTGAGGGCCATCTACGCCCCGCAGAACCTCTACTGCGTCCAC 13793 |||| || ||||| ||| | ||||| |||||| || || || |||||||| ||||| Sbjct 226817 GAGACCTTTGAGCGGCTCTTCAGGGCAATCTACATGCCCCAAAATGTCTACTGCATCCAC 226758 Query 13794 GTGGACTCCAAGTC--CGGCGACGAGTTCATCCGGGGCGTCTCGGC-CATCGCCAGGTGC 13850 ||||| |||| | |||| | | || | | ||| |||| | | | | ||| Sbjct 226757 GTGGATGGCAAGGCACCGGCAGCCT-TGCAGC--GAGCGGTGCGGCGCCTGGTGGGCTGC 226701 Query 13851 TTCCCTAACGTGGCCCTGGCCCACCGG-CTGCACGACGTGGTGTACGGCTCCTGGAGT-- 13907 ||||| |||| ||| ||| || | | || ||||| |||||| || || Sbjct 226700 TTCCCCAACGCCTTCCTCGCCTCCCACACAGAGCGG-GTGGTCTACGGC----GGTGTGT 226646 Query 13908 --CGCGTGCAGGCCGACCTCAGCTGCATGTCGGACCTGGACGCCTCCCCCGTCAAGTGGA 13965 ||| ||| ||| ||||| ||||||| ||||||| ||||| |||| ||| Sbjct 226645 CCCGCCTGCGGGCTGACCTGCACTGCATGCGGGACCTGCTGGCCTCGGCCGTGCCCTGGC 226586 Query 13966 GGTACCTGCTCAACCTGTGCGGGATGGACTTCCCGCTCAAGACCAACCTGGAGATCGTGC 14025 | ||||||||||| | |||||| ||||||||| | |||||||||| ||||||||| | Sbjct 226585 GCTACCTGCTCAATGTCTGCGGGCAGGACTTCCCCTTGAAGACCAACCGGGAGATCGTCC 226526 Query 14026 GGGCGCTGAAGGCC 14039 | ||||| ||| Sbjct 226525 AGCATCTGAAAGCC 226512 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 658456749099520