Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Callipepla_20squamata_20[genbank_20GCA_5F002218305.1_202017-07-13] 34,302 sequences; 1,045,281,893 total letters Query= NC_028461.1 Length=127011 Score E Sequences producing significant alignments: (Bits) Value seq470 123 2e-23 seq215 95.1 1e-14 >seq470 Length=704619 Score = 123 bits (136), Expect = 2e-23 Identities = 128/168 (76%), Gaps = 0/168 (0%) Strand=Plus/Plus Query 30223 CATGTCCGTGTACTCTGCTCCGAAATGCCTCCACTGGAACCCGTACACCGGTCCCAGGTC 30282 |||||| |||| |||||||| || || ||||||||||| || || || || |||| ||| Sbjct 29790 CATGTCTTTGTATTCTGCTCCAAAGTGTCTCCACTGGAAACCATAAACTGGCCCCAAGTC 29849 Query 30283 TCCCTCTTCCCTGTGCTCGAAGCCCCTCTTGTCCAAAAAGTCTCTGGAACCGTTGGCGTC 30342 |||||||| ||| | ||| ||| || |||| || || | || || ||||| || Sbjct 29850 CCCCTCTTCTCTGGTGTAGAACCCCTGTTTATCCAGGAACTCACGTGACCCATTGGCATC 29909 Query 30343 CCAGATCTTTACCCCCTTCTCAGAGAGCTCTTTGGAGTTTGTGGACCC 30390 ||| |||||||| ||||| ||||||||||||||| ||||| || || Sbjct 29910 CCAAATCTTTACGCCCTTTGCAGAGAGCTCTTTGGCATTTGTAGAACC 29957 Score = 98.7 bits (108), Expect = 8e-16 Identities = 120/164 (73%), Gaps = 0/164 (0%) Strand=Plus/Plus Query 29942 AGCCCGGTGACGTGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGT 30001 ||||| ||||| || || |||||||| ||||| || || |||||||| || || || || Sbjct 26753 AGCCCTGTGACATGGGCAATCATGTATGTGAGCAGCGAATAGCTGGCAATATTGAAAGGC 26812 Query 30002 ACCCCGAGCCCCATGTCCCCCGACCTCTGGTAGAGCTGACACGAGAGCTCTCCGTCGCTC 30061 || || || ||||| || || ||||||||||| || || || || || || || | Sbjct 26813 ACTCCTAGTCCCATATCTCCAGACCTCTGGTACAGTTGGCAAGACAGTTCACCATTCAGA 26872 Query 30062 ACGTAAAACTGACACATGGCGTGGCACGGAGGAAGAGCCATGAG 30105 || || ||||| || | || ||||| || || | |||||| || Sbjct 26873 ACATAGAACTGGCAGAGAGCATGGCAAGGCGGCAAAGCCATCAG 26916 >seq215 Length=1253150 Score = 95.1 bits (104), Expect = 1e-14 Identities = 84/105 (80%), Gaps = 0/105 (0%) Strand=Plus/Plus Query 110404 AGCTCCCTGCTGAGGACTACGTTTATCCTGTCTCTCAGAGGTCTATTCTTTTCGGGGATG 110463 |||||||||||||| |||| || || || ||| ||||||| | |||||| || || ||| Sbjct 111412 AGCTCCCTGCTGAGCACTATATTAATTCTATCTTTCAGAGGACGATTCTTCTCAGGAATG 111471 Query 110464 GAGAACCAAGTCTTTCTACCCATTATCACCACGTTCTGCTTGCCT 110508 |||||||| || ||| ||||||||||||| | |||| || ||| Sbjct 111472 GAGAACCAGGTTTTTTTACCCATTATCACTGCATTCTCTTTACCT 111516 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 406140539651784