Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Callipepla_20squamata_20[genbank_20GCA_5F002218305.1_202017-07-13] 34,302 sequences; 1,045,281,893 total letters Query= NC_028636.1 Length=135952 Score E Sequences producing significant alignments: (Bits) Value seq384 132 4e-26 >seq384 Length=852418 Score = 132 bits (146), Expect = 4e-26 Identities = 168/231 (73%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 26987 CATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTC 27046 ||||||||| ||||| || || ||||| |||||| | || || || || || || || Sbjct 86449 CATGCAGATCTTTGTGAAGACCCTGACTGGCAAGACCATCACGCTCGAGGTCGAGCCCAG 86390 Query 27047 CGACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCA 27106 ||| | ||||| | || || || || ||||||||||||||||| || |||||||| Sbjct 86389 TGACACCATTGAAAACGTAAAGGCCAAGATCCAAGACAAAGAAGGCATTCCTCCCGATCA 86330 Query 27107 ACAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAA 27166 ||| | | || | ||| ||||| || ||||||| | ||| | ||||| ||||| Sbjct 86329 GCAGAGGCTGATCTTCGCTGGCAAGCAGCTGGAAGATGGGCGCACCCTGTCCGACTACAA 86270 Query 27167 CATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 ||| || |||||||| ||| | || |||| ||||| || | |||||||| Sbjct 86269 CATCCAGAAGGAGTCCACCCTGCACCTGGTGCTGCGTCTGAGAGGTGGCAT 86219 Score = 132 bits (146), Expect = 4e-26 Identities = 168/231 (73%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 26987 CATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTC 27046 ||||||||| ||||| || || ||||| |||||| | || |||||||| || || || Sbjct 86677 CATGCAGATCTTTGTGAAGACCCTGACTGGCAAGACCATCACTCTTGAGGTCGAGCCTAG 86618 Query 27047 CGACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCA 27106 |||| | || |||| || || || || ||||||||||||||||| || |||||||| Sbjct 86617 CGACACCATAGAGAATGTGAAGGCCAAGATCCAAGACAAAGAAGGCATTCCTCCCGATCA 86558 Query 27107 ACAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAA 27166 ||| | | || | ||| || || || |||||||| | ||| | || || ||||| Sbjct 86557 GCAGAGGCTGATCTTCGCTGGTAAGCAGCTGGAAGACGGGCGCACCCTGTCTGACTACAA 86498 Query 27167 CATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 ||| || || || || ||| | || |||| ||||| || |||| ||||| Sbjct 86497 CATCCAGAAAGAATCCACCCTGCACCTGGTGCTGCGTCTGAGGGGAGGCAT 86447 Score = 123 bits (136), Expect = 2e-23 Identities = 166/231 (72%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 26987 CATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTC 27046 ||||||||| || || ||||| |||| |||||| | || |||||||| || || || Sbjct 86221 CATGCAGATCTTCGTGAAAACCTTGACTGGCAAGACAATCACTCTTGAGGTCGAGCCCAG 86162 Query 27047 CGACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCA 27106 ||| | || |||| || || || || ||||||||||||||||| || |||||||| Sbjct 86161 TGACACCATAGAGAATGTGAAGGCCAAGATCCAAGACAAAGAAGGCATTCCTCCCGATCA 86102 Query 27107 ACAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAA 27166 ||| | | || | || || || || |||||||| | ||| | ||||| ||||| Sbjct 86101 GCAGAGGCTGATCTTTGCTGGTAAGCAGCTGGAAGACGGGCGCACCCTGTCCGACTACAA 86042 Query 27167 CATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 ||| || || || || ||| | || |||| ||||| || |||| ||||| Sbjct 86041 CATCCAGAAAGAATCCACCCTGCACCTGGTGCTGCGTCTGAGGGGAGGCAT 85991 Score = 122 bits (134), Expect = 8e-23 Identities = 165/230 (72%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 26987 CATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTC 27046 ||||||||| || || || || ||||| |||||| | || || |||||||| || || Sbjct 85993 CATGCAGATCTTCGTGAAGACCCTGACTGGCAAGACCATCACCCTTGAAGTTGAGCCCAG 85934 Query 27047 CGACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCA 27106 ||| | ||||| | || || || || ||||||||||||||||| || |||||||| Sbjct 85933 TGACACCATTGAAAACGTGAAGGCCAAGATCCAAGACAAAGAAGGCATTCCTCCCGATCA 85874 Query 27107 ACAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAA 27166 ||| | | || | ||| || || || ||||||| | ||| | || || ||||| Sbjct 85873 GCAGAGGCTGATCTTCGCTGGTAAGCAGCTGGAAGATGGGCGCACCCTGTCTGACTACAA 85814 Query 27167 CATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCA 27216 ||| || |||||||| ||| | || |||| ||||| || | || |||| Sbjct 85813 CATCCAGAAGGAGTCCACCCTGCACCTGGTGCTGCGTCTGAGAGGAGGCA 85764 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 434731917863040